Literature DB >> 32311268

Multisolvent Models for Solvation Free Energy Predictions Using 3D-RISM Hydration Thermodynamic Descriptors.

Vigneshwari Subramanian1,2, Ekaterina Ratkova3, David Palmer2, Ola Engkvist4, Maxim Fedorov5,6, Antonio Llinas1.   

Abstract

The potential to predict solvation free energies (SFEs) in any solvent using a machine learning (ML) model based on thermodynamic output, extracted exclusively from 3D-RISM simulations in water is investigated. The models on multiple solvents take into account both the solute and solvent description and offer the possibility to predict SFEs of any solute in any solvent with root mean squared errors less than 1 kcal/mol. Validations that involve exclusion of fractions or clusters of the solutes or solvents exemplify the model's capability to predict SFEs of novel solutes and solvents with diverse chemical profiles. In addition to being predictive, our models can identify the solute and solvent features that influence SFE predictions. Furthermore, using 3D-RISM hydration thermodynamic output to predict SFEs in any organic solvent reduces the need to run 3D-RISM simulations in all these solvents. Altogether, our multisolvent models for SFE predictions that take advantage of the solvation effects are expected to have an impact in the property prediction space.

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Year:  2020        PMID: 32311268     DOI: 10.1021/acs.jcim.0c00065

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  2 in total

Review 1.  Biomolecular Simulations with the Three-Dimensional Reference Interaction Site Model with the Kovalenko-Hirata Closure Molecular Solvation Theory.

Authors:  Dipankar Roy; Andriy Kovalenko
Journal:  Int J Mol Sci       Date:  2021-05-11       Impact factor: 5.923

2.  MLSolvA: solvation free energy prediction from pairwise atomistic interactions by machine learning.

Authors:  Hyuntae Lim; YounJoon Jung
Journal:  J Cheminform       Date:  2021-07-31       Impact factor: 5.514

  2 in total

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