| Literature DB >> 32308549 |
Jing Li1,2, Tao-Yan Lin1,3, Lin Chen1, Yu Liu1, Mei-Juan Dian1, Wei-Chao Hao1, Xiao-Lin Lin1, Xiao-Yan Li1,4, Yong-Long Li1,4, Mei Lian1,4, Heng-Wei Chen1,4, Jun-Shuang Jia1, Xiao-Ling Zhang5, Sheng-Jun Xiao6, Dong Xiao1,4, Yan Sun7.
Abstract
MicroRNA-19 (miR-19) is identified as the key oncogenic component of the miR-17-92 cluster. When we explored the functions of the dysregulated miR-19 in lung cancer, microarray-based data unexpectedly demonstrated that some immune and inflammatory response genes (i.e., IL32, IFI6 and IFIT1) were generally down-regulated by miR-19 overexpression in A549 cells, which prompted us to fully investigate whether the miR-19 family (i.e., miR-19a and miR-19b-1) was implicated in regulating the expression of immune and inflammatory response genes in cancer cells. In the present study, we observed that miR-19a or miR-19b-1 overexpression by miRNA mimics in the A549, HCC827 and CNE2 cells significantly downregulated the expression of interferon (IFN)-regulated genes (i.e., IRF7, IFI6, IFIT1, IFITM1, IFI27 and IFI44L). Furthermore, the ectopic miR-19a or miR-19b-1 expression in the A549, HCC827, CNE2 and HONE1 cells led to a general downward trend in the expression profile of major histocompatibility complex (MHC) class I genes (such as HLA-B, HLA-E, HLA-F or HLA-G); conversely, miR-19a or miR-19b-1 inhibition by the miRNA inhibitor upregulated the aforementioned MHC Class I gene expression, suggesting that miR-19a or miR-19b-1 negatively modulates MHC Class I gene expression. The miR-19a or miR-19b-1 mimics reduced the expression of interleukin (IL)-related genes (i.e., IL1B, IL11RA and IL6) in the A549, HCC827, CNE2 or HONE1 cells. The ectopic expression of miR-19a or miR-19b-1 downregulated IL32 expression in the A549 and HCC827 cells and upregulated IL32 expression in CNE2 and HONE1 cells. In addition, enforced miR-19a or miR-19b-1 expression suppressed IL-6 production by lung cancer and nasopharyngeal carcinoma (NPC) cells. Taken together, these findings demonstrate, for the first time, that miR-19 can modulate the expression of IFN-induced genes and MHC class I genes in human cancer cells, suggesting a novel role of miR-19 in linking inflammation and cancer, which remains to be fully characterized. © The author(s).Entities:
Keywords: MHC class I gene; interferon-inducible gene; interleukin-related gene; lung cancer; miR-19a; miR-19b-1; nasopharyngeal carcinoma
Mesh:
Substances:
Year: 2020 PMID: 32308549 PMCID: PMC7163354 DOI: 10.7150/ijms.44377
Source DB: PubMed Journal: Int J Med Sci ISSN: 1449-1907 Impact factor: 3.738
Primers for qRT-PCR analysis of human miR-19
| Primer name | Primer sequence |
|---|---|
| U6 snRNA-RT | AACGCTTCACGAATTTGCGT |
| U6 snRNA-forward primer | CTCGCTTCGGCAGCACA |
| U6 snRNA-reverse primer | AACGCTTCACGAATTTGCGT |
| miR-19-RT-primer | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACTCAGT |
| miR-19a-forward primer | TGTGCAAATCTATGCAAA |
| miR-19a-reverse primer | GTGCAGGGTCCGAGGTATTC |
| miR-19b-1-forward primer | TGTGCAAATCCATGCAAA |
| miR-19b-1-reverse primer | GTGCAGGGTCCGAGGTATTC |
Primers for qRT-PCR analysis of interleukin-related genes
| Gene | Forward Primer (5'-3') | Reverse Primer (5'-3') |
|---|---|---|
| IL1B | CAGCTACGAATCTCCGACCAC | GGCAGGGAACCAGCATCTTC |
| IL6 | ACTCACCTCTTCAGAACGAATTG | CCATCTTTGGAAGGTTCAGGTTG |
| IL11RA | CAGCCAGATCAGCGGTTTAC | AGATGCTCTGCAAGCTCACAT |
| IL20RB | GGCCACTGTGCCATACAAC | TCTTTGGTGATCTCCATCCCA |
| IL32 | AGCTGGAGGACGACTTCAAA | AGAGCAGCAGAAACTCTGGA |
Figure 1miR-19 overexpression and down-regulated endogenous miR-19 expression in human cancer cells. qRT-PCR-based assay was used to analyze the expression levels of miR-19 after human lung adenocarcinoma cell lines (A549 and HCC827) and NPC cell lines(CNE2 and HONE1) transfected with miR-19 mimics (100 nM) (A-B) or miR-19 inhibitor (100 nM) (C-D) for 48 hours (h). *P<0.5, #P<0.01 by one-way ANOVA.
Figure 2miR-19 regulated the expression of IFN-related genes in cancer cells. (A) Class comparison and hierarchical clustering of differentially expressed IFN-regulated genes between miR-19- and vector-expressing A549 cells. In the cluster heatmap of IFN-inducible gene, A1, A2 and A3 represented the total RNA isolated from different generations of vector-expressing A549 cells, and B1, B2 and B3 represented the total RNA isolated from different generations of miR-19-expressing A549 cells. Genes with increased and reduced expressions are shown in red and green, respectively. (B) qRT-PCR analyzed IFN-regulated gene expression in CNE2 cells expressing miR-19a and 19b-1 transgenes simultaneously. To generate stable cell line, the recombinant lentiviruses (i.e., LV-con and LV-miR-19) were used to infect CNE2 cells to generate vector- and miR-19-expressing CNE2 cells. (C-D) miR-19 modulated IFN-related gene expression in A549 (C) and HCC827 (D) cells. (E-F) miR-19 regulated IFN-related gene expression in CNE2 cells. *P<0.5, #P<0.01 by one-way ANOVA.
Differentially expressed interferon-regulated genes
| Gene symbol | Annotation | Fold change |
|---|---|---|
| C3 | complement component 3 | 2.0557 |
| GBP1 | guanylate binding protein 1, interferon-inducible, 67kDa | 2.0482 |
| IFRD1 | interferon-related developmental regulator 1 | 1.9062 |
| IRF9 | interferon regulatory factor 9 | 1.5356 |
| IFNGR1 | interferon gamma receptor 1 | 1.4824 |
| IRF1 | interferon regulatory factor 1 | 1.1651 |
| IRF7 | interferon regulatory factor 7 | 1.0475 |
| IFI16 | interferon, gamma-inducible protein 16 | 0.8606 |
| IFITM2 | interferon induced transmembrane protein 2 (1-8D) | 0.8439 |
| PSMB10 | proteasome (prosome, macropain) subunit, beta type, 10 | 0.7610 |
| IRF9 /// RNF31 | interferon regulatory factor 9 /// ring finger protein 31 | 0.7605 |
| IFI35 | interferon-induced protein 35 | 0.6960 |
| PRKRA | protein kinase, interferon-inducible double stranded RNA dependent activator | 0.6525 |
| IFI6 | interferon, alpha-inducible protein 6 | 0.6417 |
| IFIT1 | interferon-induced protein with tetratricopeptide repeats 1 | 0.6346 |
| IFIT3 | interferon-induced protein with tetratricopeptide repeats 3 | 0.6016 |
| PSMB9 | proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional peptidase 2) | 0.5405 |
| PSMB8 | proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7) | 0.5074 |
| IRF2BP2 | interferon regulatory factor 2 binding protein 2 | 0.4720 |
| C1RL | complement component 1, r subcomponent-like | 0.4445 |
| C5 | complement component 5 | 0.2388 |
Figure 4miR-19 overexpression enhanced or reduced the IL-related genes expression in cancer cells. (A) Graph illustrating the fold change in gene expression of representative differentially IL-related genes between LV-miR-19-infected A549 cells to LV-con-infected A549 cells. The horizontal dashed line marks a fold change of 1 (no change). (B-E) miR-19a or miR-19b-1 overexpression altered the IL-related gene expression in cancer cells. *P<0.5, #P<0.01 by one-way ANOVA.
Gene ontology analysis of up- and down-regulated genes (related with immune and inflammation) from miR-19-expressing A549 cells to vector-expressing A549 cells
| GO ID | Biological process | Count | ||
|---|---|---|---|---|
| GO:0006954 | inflammatory response | 20 | 1.83E-25 | 5.78E-25 |
| GO:0006958 | complement activation, classical pathway | 4 | 1.60E-07 | 1.01E-07 |
| GO:0045087 | innate immune response | 4 | 1.00E-04 | 2.77E-05 |
| GO:0006955 | immune response | 8 | 1.21E-04 | 3.28E-05 |
| GO:0006957 | complement activation, alternative pathway | 2 | 2.74E-04 | 6.69E-05 |
| GO:0030101 | natural killer cell activation | 2 | 5.45E-04 | 1.19E-04 |
| GO:0002842 | positive regulation of T cell mediated immune response to tumor cell | 1 | 0.003256 | 4.26E-04 |
| GO:0002378 | immunoglobulin biosynthesis | 1 | 0.003256 | 4.26E-04 |
| GO:0002862 | negative regulation of inflammatory response to antigenic stimulus | 1 | 0.00488 | 5.70E-04 |
| GO:0002863 | positive regulation of inflammatory response to antigenic stimulus | 1 | 0.006502 | 6.77E-04 |
| GO:0050729 | positive regulation of inflammatory response | 1 | 0.033668 | 0.002274 |
| GO:0045089 | positive regulation of innate immune response | 1 | 0.036815 | 0.002446 |
| GO:0002768 | immune response-regulating cell surface receptor signaling pathway | 1 | 0.044637 | 0.002855 |
Figure 3miR-19 modulated the expression of MHC class I genes in cancer cells. Cancer cells were transfected with miR-19 mimics (100 nM)(A,C,E,G) or miR-19 inhibitor (100 nM)(B,D,F,H) for 48h, respectively, followed by evaluating MHC class I gene expression via qRT-PCR.
Figure 5miR-19a or miR-19b-1 overexpression resulted in the decreased IL6 production by cancer cells. The indicated cells were transfected with 100 nM miR-19 mimics or its mimics control, and incubated for 24h (A) and 48h (B). Supernatants were collected and assayed for IL6 levels. *P<0.5, #P<0.01 by one-way ANOVA.
Primers for qRT-PCR analysis of interferon-regulated genes
| Gene | Forward primer (5'-3') | Reverse primer (5'-3') |
|---|---|---|
| IFI6 | GGTCTGCGATCCTGAATGGG | TCACTATCGAGATACTTGTGGGT |
| IFI16 | AGACTGAAGACTGAACCTGAAGA | GAACCCATTGCGGCAAACATA |
| IFI27 | TGCTCTCACCTCATCAGCAGT | CACAACTCCTCCAATCACAACT |
| IFI35 | GTGGACGTTCGGGAGCTAC | ACTGGCCGATTTGGCACAG |
| IFI44L | AGCCGTCAGGGATGTACTATAAC | AGGGAATCATTTGGCTCTGTAGA |
| IFIT1 | TTGATGACGATGAAATGCCTGA | CAGTCACCAGACTCCTCAC |
| IFIT2 | AAGCACCTCAAAGGGCAAAAC | TCGGCCCATGTGATAGTAGAC |
| IFITM1 | CCAAGGTCCACCGTGATTAAC | ACCAGTTCAAGAAGAGGGTGTT |
| IRF1 | ATGCCCATCACTCGGATGC | CCCTGCTTTGTATCGGCCTG |
| IRF7 | CCCACGCTATACCATCTACCT | GATGTCGTCATAGAGGCTGTTG |
| GAPDH | ACAACTTTGGTATCGTGGAAGG | GCCATCACGCCACAGTTTC |
Primers for qRT-PCR analysis of MHC class I genes
| Gene | Forward Primer (5'-3') | Reverse Primer (5'-3') |
|---|---|---|
| HLA-B | CAGTTCGTGAGGTTCGACAG | CAGCCGTACATGCTCTGGA |
| HLA-E | TTCCGAGTGAATCTGCGGAC | GTCGTAGGCGAACTGTTCATAC |
| HLA-F | TGGCCCTGACCGATACTTG | GCAGGAATTGCGTGTCGTC |
| HLA-G | GAGGAGACACGGAACACCAAG | GTCGCAGCCAATCATCCACT |