Literature DB >> 32308042

Genome mining as a biotechnological tool for the discovery of novel marine natural products.

Leixia Chu1, Jinping Huang1, Mustafa Muhammad1, Zixin Deng2, Jiangtao Gao1.   

Abstract

Compared to terrestrial environments, the oceans harbor a variety of environments, creating higher biodiversity, which gives marine natural products a high occurrence of significant biology and novel chemistry. However, traditional bioassay-guided isolation and purification strategies are severely limiting the discovery of additional novel natural products from the ocean. With an increasing number of marine microorganisms being sequenced, genome mining is gradually becoming a powerful tool to retrieve novel marine natural products. In this review, we have summarized genome mining approaches used to analyze key enzymes of biosynthetic pathways and predict the chemical structure of new gene clusters by introducing successful stories that used genome mining strategy to identify new marine-derived compounds. Furthermore, we also put forward challenges for genome mining techniques and their proposed solutions. The detailed analysis of the genome mining strategy will help researchers to understand this novel technique and its application. With the development of a genome sequence, genome mining strategies will be applied more widely, which will drive rapid development in the field of marine natural product development.

Keywords:  Genome mining; biosynthesis; drug discovery and development; gene clusters; marine natural products

Mesh:

Substances:

Year:  2020        PMID: 32308042     DOI: 10.1080/07388551.2020.1751056

Source DB:  PubMed          Journal:  Crit Rev Biotechnol        ISSN: 0738-8551            Impact factor:   8.429


  5 in total

Review 1.  Marine Microbial-Derived Resource Exploration: Uncovering the Hidden Potential of Marine Carotenoids.

Authors:  Ray Steven; Zalfa Humaira; Yosua Natanael; Fenny M Dwivany; Joko P Trinugroho; Ari Dwijayanti; Tati Kristianti; Trina Ekawati Tallei; Talha Bin Emran; Heewon Jeon; Fahad A Alhumaydhi; Ocky Karna Radjasa; Bonglee Kim
Journal:  Mar Drugs       Date:  2022-05-26       Impact factor: 6.085

Review 2.  Marine Actinomycetes Associated with Stony Corals: A Potential Hotspot for Specialized Metabolites.

Authors:  Galana Siro; Atanas Pipite; Ketan Christi; Sathiyaraj Srinivasan; Ramesh Subramani
Journal:  Microorganisms       Date:  2022-07-04

3.  Marine Antibiotics 2020.

Authors:  Yannick Fleury
Journal:  Mar Drugs       Date:  2021-06-21       Impact factor: 5.118

Review 4.  Multi-Omics-Based Discovery of Plant Signaling Molecules.

Authors:  Fei Luo; Zongjun Yu; Qian Zhou; Ancheng Huang
Journal:  Metabolites       Date:  2022-01-13

Review 5.  Novel Alkaloids from Marine Actinobacteria: Discovery and Characterization.

Authors:  Anne-Sofie De Rop; Jeltien Rombaut; Thomas Willems; Marilyn De Graeve; Lynn Vanhaecke; Paco Hulpiau; Sofie L De Maeseneire; Maarten L De Mol; Wim K Soetaert
Journal:  Mar Drugs       Date:  2021-12-22       Impact factor: 5.118

  5 in total

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