Literature DB >> 32305911

Deep Learning of Spatiotemporal Filtering for Fast Super-Resolution Ultrasound Imaging.

Katherine G Brown, Debabrata Ghosh, Kenneth Hoyt.   

Abstract

Super-resolution ultrasound (SR-US) imaging is a new technique that breaks the diffraction limit and allows visualization of microvascular structures down to tens of micrometers. The image processing methods for the spatiotemporal filtering needed in SR-US, such as singular value decomposition (SVD), are computationally burdensome and performed offline. Deep learning has been applied to many biomedical imaging problems, and trained neural networks have been shown to process an image in milliseconds. The goal of this study was to evaluate the effectiveness of deep learning to realize a spatiotemporal filter in the context of SR-US processing. A 3-D convolutional neural network (3DCNN) was trained on in vitro and in vivo data sets using SVD as ground truth in tissue clutter reduction. In vitro data were obtained from a tissue-mimicking flow phantom, and in vivo data were collected from murine tumors of breast cancer. Three training techniques were studied: training with in vitro data sets, training with in vivo data sets, and transfer learning with initial training on in vitro data sets followed by fine-tuning with in vivo data sets. The neural network trained with in vitro data sets followed by fine-tuning with in vivo data sets had the highest accuracy at 88.0%. The SR-US images produced with deep learning allowed visualization of vessels as small as [Formula: see text] in diameter, which is below the diffraction limit (wavelength of [Formula: see text] at 14 MHz). The performance of the 3DCNN was encouraging for real-time SR-US imaging with an average processing frame rate for in vivo data of 51 Hz with GPU acceleration.

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Year:  2020        PMID: 32305911      PMCID: PMC7523282          DOI: 10.1109/TUFFC.2020.2988164

Source DB:  PubMed          Journal:  IEEE Trans Ultrason Ferroelectr Freq Control        ISSN: 0885-3010            Impact factor:   2.725


  31 in total

1.  Deep 3D convolutional neural networks for fast super-resolution ultrasound imaging.

Authors:  Katherine Brown; James Dormer; Baowei Fei; Kenneth Hoyt
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2019-03-15

Review 2.  Deep learning.

Authors:  Yann LeCun; Yoshua Bengio; Geoffrey Hinton
Journal:  Nature       Date:  2015-05-28       Impact factor: 49.962

3.  Spatiotemporal Clutter Filtering of Ultrafast Ultrasound Data Highly Increases Doppler and fUltrasound Sensitivity.

Authors:  Charlie Demené; Thomas Deffieux; Mathieu Pernot; Bruno-Félix Osmanski; Valérie Biran; Jean-Luc Gennisson; Lim-Anna Sieu; Antoine Bergel; Stéphanie Franqui; Jean-Michel Correas; Ivan Cohen; Olivier Baud; Mickael Tanter
Journal:  IEEE Trans Med Imaging       Date:  2015-04-30       Impact factor: 10.048

4.  In vivo acoustic super-resolution and super-resolved velocity mapping using microbubbles.

Authors:  Kirsten Christensen-Jeffries; Richard J Browning; Meng-Xing Tang; Christopher Dunsby; Robert J Eckersley
Journal:  IEEE Trans Med Imaging       Date:  2014-09-23       Impact factor: 10.048

5.  Super-Resolution Ultrasound Imaging of Skeletal Muscle Microvascular Dysfunction in an Animal Model of Type 2 Diabetes.

Authors:  Debabrata Ghosh; Jun Peng; Katherine Brown; Shashank Sirsi; Chieko Mineo; Philip W Shaul; Kenneth Hoyt
Journal:  J Ultrasound Med       Date:  2019-01-31       Impact factor: 2.153

6.  Improved Super-Resolution Ultrasound Microvessel Imaging With Spatiotemporal Nonlocal Means Filtering and Bipartite Graph-Based Microbubble Tracking.

Authors:  Pengfei Song; Joshua D Trzasko; Armando Manduca; Runqing Huang; Ramanathan Kadirvel; David F Kallmes; Shigao Chen
Journal:  IEEE Trans Ultrason Ferroelectr Freq Control       Date:  2018-02       Impact factor: 2.725

7.  Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning.

Authors:  Hoo-Chang Shin; Holger R Roth; Mingchen Gao; Le Lu; Ziyue Xu; Isabella Nogues; Jianhua Yao; Daniel Mollura; Ronald M Summers
Journal:  IEEE Trans Med Imaging       Date:  2016-02-11       Impact factor: 10.048

8.  Recent developments in dynamic contrast-enhanced ultrasound imaging of tumor angiogenesis.

Authors:  Reshu Saini; Kenneth Hoyt
Journal:  Imaging Med       Date:  2014-02-01

9.  3-D Ultrasound Localization Microscopy for Identifying Microvascular Morphology Features of Tumor Angiogenesis at a Resolution Beyond the Diffraction Limit of Conventional Ultrasound.

Authors:  Fanglue Lin; Sarah E Shelton; David Espíndola; Juan D Rojas; Gianmarco Pinton; Paul A Dayton
Journal:  Theranostics       Date:  2017-01-01       Impact factor: 11.556

10.  Microvascular flow dictates the compromise between spatial resolution and acquisition time in Ultrasound Localization Microscopy.

Authors:  Vincent Hingot; Claudia Errico; Baptiste Heiles; Line Rahal; Mickael Tanter; Olivier Couture
Journal:  Sci Rep       Date:  2019-02-21       Impact factor: 4.379

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  3 in total

1.  Faster super-resolution ultrasound imaging with a deep learning model for tissue decluttering and contrast agent localization.

Authors:  Katherine G Brown; Scott Chase Waggener; Arthur David Redfern; Kenneth Hoyt
Journal:  Biomed Phys Eng Express       Date:  2021-10-25

Review 2.  Current Development and Applications of Super-Resolution Ultrasound Imaging.

Authors:  Qiyang Chen; Hyeju Song; Jaesok Yu; Kang Kim
Journal:  Sensors (Basel)       Date:  2021-04-01       Impact factor: 3.576

3.  Deep Learning-Based Microbubble Localization for Ultrasound Localization Microscopy.

Authors:  Xi Chen; Matthew R Lowerison; Zhijie Dong; Aiguo Han; Pengfei Song
Journal:  IEEE Trans Ultrason Ferroelectr Freq Control       Date:  2022-03-30       Impact factor: 3.267

  3 in total

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