Literature DB >> 32305817

Mesoscale organization of the chromatin fiber.

Nils Krietenstein1, Oliver J Rando2.   

Abstract

The proper organization of the physical genome is essential to facilitate DNA-templated processes from transcription to replication to DNA repair. Genome-wide studies over the past two decades have provided us with a detailed understanding of the positions and modification states of nucleosomes across the genomes of many organisms, as well as an increasingly mature understanding of chromosome organization at the kilobase to megabase scale. Here, we explore chromatin organization at intermediate scales of ∼2-10 nucleosomes, from early views supporting a secondary structural element known as the 30nm fiber to more recent 'sea of nucleosomes' models.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Mesh:

Substances:

Year:  2020        PMID: 32305817     DOI: 10.1016/j.gde.2020.02.022

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  10 in total

Review 1.  Contribution of advanced fluorescence nano microscopy towards revealing mitotic chromosome structure.

Authors:  S W Botchway; S Farooq; A Sajid; I K Robinson; M Yusuf
Journal:  Chromosome Res       Date:  2021-03-09       Impact factor: 5.239

2.  Local chromatin fiber folding represses transcription and loop extrusion in quiescent cells.

Authors:  Sarah G Swygert; Dejun Lin; Stephanie Portillo-Ledesma; Po-Yen Lin; Dakota R Hunt; Cheng-Fu Kao; Tamar Schlick; William S Noble; Toshio Tsukiyama
Journal:  Elife       Date:  2021-11-04       Impact factor: 8.140

3.  Nucleosome plasticity is a critical element of chromatin liquid-liquid phase separation and multivalent nucleosome interactions.

Authors:  Stephen E Farr; Esmae J Woods; Jerelle A Joseph; Adiran Garaizar; Rosana Collepardo-Guevara
Journal:  Nat Commun       Date:  2021-05-17       Impact factor: 14.919

4.  Structural features of nucleosomes in interphase and metaphase chromosomes.

Authors:  Yasuhiro Arimura; Rochelle M Shih; Ruby Froom; Hironori Funabiki
Journal:  Mol Cell       Date:  2021-09-02       Impact factor: 17.970

5.  Nucleosome-induced homology recognition in chromatin.

Authors:  Jonathan G Hedley; Vladimir B Teif; Alexei A Kornyshev
Journal:  J R Soc Interface       Date:  2021-06-16       Impact factor: 4.293

6.  Loops, topologically associating domains, compartments, and territories are elastic and robust to dramatic nuclear volume swelling.

Authors:  Jacob T Sanders; Rosela Golloshi; Priyojit Das; Yang Xu; Peyton H Terry; Darrian G Nash; Job Dekker; Rachel Patton McCord
Journal:  Sci Rep       Date:  2022-03-18       Impact factor: 4.379

7.  NucleoMap: A computational tool for identifying nucleosomes in ultra-high resolution contact maps.

Authors:  Yuanhao Huang; Bingjiang Wang; Jie Liu
Journal:  PLoS Comput Biol       Date:  2022-07-14       Impact factor: 4.779

8.  A Bottom-Up Coarse-Grained Model for Nucleosome-Nucleosome Interactions with Explicit Ions.

Authors:  Tiedong Sun; Vishal Minhas; Alexander Mirzoev; Nikolay Korolev; Alexander P Lyubartsev; Lars Nordenskiöld
Journal:  J Chem Theory Comput       Date:  2022-05-17       Impact factor: 6.578

Review 9.  Biology and Physics of Heterochromatin-Like Domains/Complexes.

Authors:  Prim B Singh; Stepan N Belyakin; Petr P Laktionov
Journal:  Cells       Date:  2020-08-11       Impact factor: 6.600

Review 10.  Nuclear cGAS: guard or prisoner?

Authors:  Carina C de Oliveira Mann; Karl-Peter Hopfner
Journal:  EMBO J       Date:  2021-07-12       Impact factor: 11.598

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.