Literature DB >> 32304901

Chromosome dynamics during interphase: a biophysical perspective.

Maxime Mc Tortora1, Hossein Salari1, Daniel Jost2.   

Abstract

The dynamic nature of chromosome organization plays a central role in the regulation of many crucial processes, such as DNA transcription and replication. However, the molecular bases of the link between genomic function, structure and dynamics remain elusive. In this review, we focus on how biophysical modelling can be instrumentally used to rationalize experimental studies of chromosome dynamics, and to probe the impact of putative mechanisms on genome folding kinetics during interphase. We introduce the general connection between chromatin internal organization and dynamics, and outline the potential effects of passive interactions mediated by architectural proteins and of active, energy-dependent processes on chromatin motion. Finally, we discuss current ambiguities emerging from in vivo observations, in particular related to ATP depletion and transcriptional activation, and highlight future perspectives.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2020        PMID: 32304901     DOI: 10.1016/j.gde.2020.03.001

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  10 in total

1.  Heterogeneous interactions and polymer entropy decide organization and dynamics of chromatin domains.

Authors:  Kiran Kumari; J Ravi Prakash; Ranjith Padinhateeri
Journal:  Biophys J       Date:  2022-06-06       Impact factor: 3.699

Review 2.  Celebrating Mendel, McClintock, and Darlington: On end-to-end chromosome fusions and nested chromosome fusions.

Authors:  Martin A Lysak
Journal:  Plant Cell       Date:  2022-07-04       Impact factor: 12.085

Review 3.  Biology and Model Predictions of the Dynamics and Heterogeneity of Chromatin-Nuclear Lamina Interactions.

Authors:  Julia Madsen-Østerbye; Aurélie Bellanger; Natalia M Galigniana; Philippe Collas
Journal:  Front Cell Dev Biol       Date:  2022-05-26

Review 4.  Chromosome Changes in Soma and Germ Line: Heritability and Evolutionary Outcome.

Authors:  Irina Bakloushinskaya
Journal:  Genes (Basel)       Date:  2022-03-28       Impact factor: 4.141

Review 5.  4D nucleome modeling.

Authors:  Marco Di Stefano; Jonas Paulsen; Daniel Jost; Marc A Marti-Renom
Journal:  Curr Opin Genet Dev       Date:  2020-11-27       Impact factor: 5.578

6.  Spatial organization of chromosomes leads to heterogeneous chromatin motion and drives the liquid- or gel-like dynamical behavior of chromatin.

Authors:  Hossein Salari; Marco Di Stefano; Daniel Jost
Journal:  Genome Res       Date:  2021-12-28       Impact factor: 9.438

Review 7.  A Liquid State Perspective on Dynamics of Chromatin Compartments.

Authors:  Rabia Laghmach; Michele Di Pierro; Davit Potoyan
Journal:  Front Mol Biosci       Date:  2022-01-13

8.  A quantitative modelling approach for DNA repair on a population scale.

Authors:  Leo Zeitler; Cyril Denby Wilkes; Arach Goldar; Julie Soutourina
Journal:  PLoS Comput Biol       Date:  2022-09-12       Impact factor: 4.779

9.  Multiscale modeling of genome organization with maximum entropy optimization.

Authors:  Xingcheng Lin; Yifeng Qi; Andrew P Latham; Bin Zhang
Journal:  J Chem Phys       Date:  2021-07-07       Impact factor: 3.488

Review 10.  Navigating the crowd: visualizing coordination between genome dynamics, structure, and transcription.

Authors:  Haitham A Shaban; Roman Barth; Kerstin Bystricky
Journal:  Genome Biol       Date:  2020-11-17       Impact factor: 13.583

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.