Mark Grivainis1,2, Zuojian Tang1,2, David Fenyö1,2. 1. Institute for Systems Genetics. 2. Department of Biochemistry and Molecular Pharmacology, NYU School of Medicine, 550 1st Ave, New York, NY 10016, USA.
Abstract
MOTIVATION: Retrotransposition is an important force in shaping the human genome and is involved in prenatal development, disease and aging. Current genome browsers are not optimized for visualizing the experimental evidence for retrotransposon insertions. RESULTS: We have developed a specialized browser to visualize the evidence for retrotransposon insertions for both targeted and whole-genome sequencing data. AVAILABILITY AND IMPLEMENTATION: TranspoScope's source code, as well as installation instructions, are available at https://github.com/FenyoLab/transposcope.
MOTIVATION: Retrotransposition is an important force in shaping the human genome and is involved in prenatal development, disease and aging. Current genome browsers are not optimized for visualizing the experimental evidence for retrotransposon insertions. RESULTS: We have developed a specialized browser to visualize the evidence for retrotransposon insertions for both targeted and whole-genome sequencing data. AVAILABILITY AND IMPLEMENTATION: TranspoScope's source code, as well as installation instructions, are available at https://github.com/FenyoLab/transposcope.
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