| Literature DB >> 32294892 |
Abstract
This work presents an investigation to model chemical bonding in various dimers based on the atomic fragment approach. The atomic fragment approach is an ab-initio, parameter-free implementation of orbital-free density functional theory which is based on the bifunctional formalism, i.e., it uses both the density and the Pauli potential as two separate variables. While providing the exact Kohn-Sham Pauli kinetic energy when the orbital-based Kohn-Sham data are used, the bifunctional formalism allows for approximations of the functional derivative which are orbital-free. In its first implementation, the atomic fragment approach uses atoms in their ground state to model the Pauli potential. Here, it is tested how artificial closed-shell fragments with non-integer electron occupation perform regarding the prediction of bond lengths of diatomics. Such fragments can sometimes mimic the electronic structure of a molecule better than groundstate fragments. It is found that bond lengths may indeed be considerably improved in some of the tested diatomics, in accord with predictions based on the electronic structure.Entities:
Keywords: Pauli kinetic energy; Pauli potential; atomic fragment approach; bifunctional; chemical bonding; orbital-free density functional theory; real space
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Year: 2020 PMID: 32294892 PMCID: PMC7221999 DOI: 10.3390/molecules25081771
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Bond distances (in Bohr) obtained from experiment, Kohn-Sham (KS) data and orbital-free density functional theory (OF-DFT) using the atomic fragment approach of zeroth and first order level, together with the bond distances from the recent work using the atomic groundstate fragments (gs PP) and closed-shell atomic fragments (cs PP) in order to approximate the molecular Pauli potential, respectively. The respective relative errors to the experimental data are given in the subsequent columns. Their absolute average, the mean absolute percentage error (MAPE) is given in the last row. The zeroth order level has been performed with frozen fragments. Equilibrium bond length from first order level and the recent work are evaluated at valence optimized level [51]. Bond distances from KS data are obtained with ADF [54] using LDA(Xonly) level with the QZ4P basis sets.
| OF-DFT | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Recent Work | |||||||||||
| Exp. [ | KS |
| 0th [ |
| 1th [ |
| gs PP |
| cs PP |
| |
| N | 2.07 | 2.09 | 0.8 | 2.9 | 39.8 | 2.30 | 10.9 | 2.26 | 8.7 | 2.12 | 2.1 |
| O | 2.28 | 2.31 | 1.0 | 2.6 | 13.9 | 1.85 | −18.9 | 1.84 | −19.1 | 1.83 | −19.6 |
| CO | 2.13 | 2.15 | 0.9 | 3.0 | 40.7 | 2.20 | 3.2 | 2.14 | 0.4 | 2.09 | −2.0 |
| Be | 4.63 | 4.69 | 1.2 | 4.4 | −5.0 | 4.15 | −10.4 | 4.14 | −10.7 | 4.14 | −10.7 |
| B | 3.00 | 3.08 | 2.6 | – | – | – | – | 3.16 | 5.3 | 3.01 | 0.0 |
| C | 2.35 | 2.66 | 13.1 | – | – | – | – | 2.64 | 12.4 | 2.49 | 6.2 |
| NO | 2.17 | 2.19 | 0.7 | – | – | – | – | 2.02 | −7.0 | 1.96 | −9.9 |
| CN | 2.21 | 2.23 | 0.5 | – | – | – | – | 2.42 | 9.3 | 2.28 | 3.1 |
| BeO | 2.52 | 2.54 | 1.2 | – | – | – | – | 2.53 | 0.6 | 2.52 | 0.3 |
| MAPE | 2.4 | 24.9 | 10.8 | 8.2 | 6.0 | ||||||
Figure 1Pauli potentials for the N2 molecule from the atomic fragment approach using closed shell fragments (first column) together with the first order level (third column) and KS data (second column). (a) relative height field using closed-shell (cs) atomic fragments, (b) relative height field using molecular Kohn-Sham (KS) orbitals, (c) relative height field using groundstate (gs) atomic fragments, (d) orthoslice using cs atomic fragments, (e) orthoslice using molecular KS orbitals, (f) orthoslice using gs atomic fragments, (g) difference between the molecular and the cs Pauli potential (in black: isolines of the KS Pauli potential indicating regions of high contribution to the Pauli kinetic energy), (h) difference between the cs and the gs Pauli potential, (i) difference between the molecular and the gs Pauli potential (in black: isolines of the KS Pauli potential indicating regions of high contribution to the Pauli kinetic energy).
Figure 2Energetic binding curve for N together with its kinetic and potential components. All data are evaluated as the difference between the molecular data and the groundstate atoms. Black: binding energy E, red: total kinetic energy , orange: Pauli kinetic energy , green: von Weizsäcker kinetic energy , blue: total potential energy V. The dashed lines mark the minima of the respective curves. Inset: binding energy E around the equilibrium distance.