| Literature DB >> 32291542 |
Huipeng Ge1, Xiufen Wang1, Xiangning Yuan1, Gong Xiao1, Chengzhi Wang1, Tianci Deng1, Qiongjing Yuan2, Xiangcheng Xiao3.
Abstract
In December 2019, pneumonia of unknown cause occurred in Wuhan, Hubei Province, China. On 7 January 2020, a novel coronavirus, named as severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), was identified in the throat swab sample of one patient. The World Health Organization (WHO) announced the epidemic disease caused by SARS-CoV-2 as coronavirus disease 2019 (COVID-19). Currently, COVID-19 has spread widely around the world, affecting more than seventy countries. China, with a huge burden of this disease, has taken strong measures to control the spread and improve the curative rate of COVID-19. In this review, we summarized the epidemiological characteristics, clinical features, diagnosis, treatment, and prognosis of COVID-19. A comprehensive understanding will help to control the disease.Entities:
Keywords: Clinical; Coronavirus disease 2019; Epidemiology; Pathology; Severe acute respiratory syndrome coronavirus-2; Treatment
Mesh:
Year: 2020 PMID: 32291542 PMCID: PMC7154215 DOI: 10.1007/s10096-020-03874-z
Source DB: PubMed Journal: Eur J Clin Microbiol Infect Dis ISSN: 0934-9723 Impact factor: 3.267
Fig. 1Genome organization of SARS-CoV-2 in different studies [7, 12, 15, 17–19]. ORF = open reading frame (orange). Structural proteins including S, E, M, N (blue) (S = spike, E = envelope, M = membrane, N = nucleocapsid). Accessory proteins including 3, 3a, 3b, 6, 7, 8, 9a, 9b, 10b, 13, 14 (purple). SP = signal peptide. S1 = subunit 1. S2 = subunit 2. NTD = N-terminal domain. RBD = receptor binding domain. ESD = external subdomain. FP = fusion peptide. HR1 = heptad repeat 1. HR2 = heptad repeat 2. TM = transmembrane domain. CP = cytoplasmic domain. The length of genes is not drawn in scale
Genome identity between SARS-CoV-2 and other bat-like coronavirus
| Study | Sample size | Sequence identity of sample (%) | Source of sample | Huanan seafood market | Lung lesion | Approach | Genome length | Type of coronavirus | Gene sequence identity (%) | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RdRp gene* | bat-SL-CoV ZC45 | bat-SL-CoV ZXC21 | SARS-CoV | MERS-CoV | |||||||||
| Lu [ | 9 | > 99.98 | BALF or throat swabs | 8/9 | Yes | NGS | - | β-Cov | - | 87.99 | 87.23 | 79.0 | 50.0 |
| Wu [ | 3 | Almost identity | Obtain from ViPR and NCBI | - | - | In-depth genome annotation | 29.8 kb | β-Cov | - | Closer | Closer | - | Distant |
| D. Paraskevis [ | 1 | - | Downloaded from NCBI | - | - | NGS | - | β-Cov | 96.3 | - | - | - | - |
| Chen [ | 2 | - | BALF | 2/2 | Yes | mNGS | 29,881nt | β-Cov | 98.7 | 87.9 | 87.9 | 79.7 | - |
| Chan [ | 1 | - | Obtain from GenBank | - | - | Phylogenetic analysis | 29,891nt | β-Cov | - | 89.0 | 89.0 | 82.0 | - |
| Chan [ | 6 | 99.99 | Respiratory samples | 0/5 | Yes | RT-PCR sequence | 29.8 kb | β-Cov | - | 89.0 | - | - | - |
| Wu [ | 1 | - | BALF | 1/1 | Yes | mNGS | 29,903 nt | β-Cov | - | 89.1 | - | - | - |
| Zhou [ | 7 | 99.9 | BALF | 6/7 | Yes | mNGS | 29.9Kb | β-Cov | 96.2 | 88.1 | 88.0 | 79.5 | - |
[7]aEight complete and two partial genome sequences of SARS-CoV-2 were obtained. [28]aFive samples were tested positive for SARS-CoV-2. RdRp gene*, RNA-dependent RNA polymerase gene; CoV, coronavirus; SARS, severe acute respiratory syndrome; MERS, Middle East respiratory syndrome; nt, nucleotide; kb = kilobase; BALF, bronchoalveolar lavage fluid; mNGS, metagenomic next-generation sequencing testing; NCBI, National Center for Biotechnology Information; ViPR, virus pathogen database and analysis resource
Clinical and laboratory findings of patients with SARS-CoV-2 infection [1–3, 39, 41]
| Fever | 77.4–98.6% | Lymphopenia | 35.3–82.1% |
| Cough | 59.4–81.8% | Thrombocytopenia | 5.0–36.2% |
| Fatigue | 38.1–69.6% | Leukopenia | 9.1–33.7% |
| Dyspnea | 3.2–55.0% | Increased CRP | 60.7–86.3% |
| Myalgia | 11.1–34.8% | Increased | 36.4–46.4% |
| Sputum production | 28.2–56.5% | Increased LDH | 27.4–75.8% |
| Headache | 6.5–33.9% | Increased CK | 8.0–32.5% |
| 25.2–50.5% | Prolonged prothrombin time | 58.0% | |
| Increased ALT | 16.1–28.3% | ||
| ARDS | 3.4–29.3% | Increased AST | 22.2–36.7% |
| Shock | 1.0–8.7% | Increased interleulin-6 | 51.5% |
| Acute renal injury | 0.5–7.3% | Increased serum fenitin | 62.6% |
| Acute cardiac injury | 7.2–12.2% | Increased ESR | 84.8% |
| Secondary infections | 9.8% | Increased procalcitonin | 5.5–11.3% |
| Increased troponin I | 12.2% | ||
| Increased creatinine | 1.9–9.8% | ||
ARDS, acute respiratory distress syndrome; CRP, C-reactive protein; LDH, lactose dehydrogenase; CK, creatinine kinase; ALT, alanine aminotransferase; AST, aspartate aminotransferase; ESR, erythrocyte sedimentation rate