Literature DB >> 32291334

Protein conformations à la carte, a step further in de novo protein design.

Faruck Morcos1,2,3.   

Abstract

Year:  2020        PMID: 32291334      PMCID: PMC7183145          DOI: 10.1073/pnas.2004188117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


× No keyword cloud information.
  21 in total

1.  A minimal sequence code for switching protein structure and function.

Authors:  Patrick A Alexander; Yanan He; Yihong Chen; John Orban; Philip N Bryan
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-18       Impact factor: 11.205

Review 2.  Theory of protein folding: the energy landscape perspective.

Authors:  J N Onuchic; Z Luthey-Schulten; P G Wolynes
Journal:  Annu Rev Phys Chem       Date:  1997       Impact factor: 12.703

Review 3.  The coming of age of de novo protein design.

Authors:  Po-Ssu Huang; Scott E Boyken; David Baker
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

4.  Rational design of proteins that exchange on functional timescales.

Authors:  James A Davey; Adam M Damry; Natalie K Goto; Roberto A Chica
Journal:  Nat Chem Biol       Date:  2017-10-23       Impact factor: 15.040

5.  ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules.

Authors:  Andrew Leaver-Fay; Michael Tyka; Steven M Lewis; Oliver F Lange; James Thompson; Ron Jacak; Kristian Kaufman; P Douglas Renfrew; Colin A Smith; Will Sheffler; Ian W Davis; Seth Cooper; Adrien Treuille; Daniel J Mandell; Florian Richter; Yih-En Andrew Ban; Sarel J Fleishman; Jacob E Corn; David E Kim; Sergey Lyskov; Monica Berrondo; Stuart Mentzer; Zoran Popović; James J Havranek; John Karanicolas; Rhiju Das; Jens Meiler; Tanja Kortemme; Jeffrey J Gray; Brian Kuhlman; David Baker; Philip Bradley
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

6.  RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite.

Authors:  Sarel J Fleishman; Andrew Leaver-Fay; Jacob E Corn; Eva-Maria Strauch; Sagar D Khare; Nobuyasu Koga; Justin Ashworth; Paul Murphy; Florian Richter; Gordon Lemmon; Jens Meiler; David Baker
Journal:  PLoS One       Date:  2011-06-24       Impact factor: 3.240

7.  RosettaRemodel: a generalized framework for flexible backbone protein design.

Authors:  Po-Ssu Huang; Yih-En Andrew Ban; Florian Richter; Ingemar Andre; Robert Vernon; William R Schief; David Baker
Journal:  PLoS One       Date:  2011-08-31       Impact factor: 3.240

8.  Crystal Structure of the Human Cytomegalovirus Glycoprotein B.

Authors:  Heidi G Burke; Ekaterina E Heldwein
Journal:  PLoS Pathog       Date:  2015-10-20       Impact factor: 6.823

9.  Assessment of contact predictions in CASP12: Co-evolution and deep learning coming of age.

Authors:  Joerg Schaarschmidt; Bohdan Monastyrskyy; Andriy Kryshtafovych; Alexandre M J J Bonvin
Journal:  Proteins       Date:  2017-11-07

10.  Improved de novo structure prediction in CASP11 by incorporating coevolution information into Rosetta.

Authors:  Sergey Ovchinnikov; David E Kim; Ray Yu-Ruei Wang; Yuan Liu; Frank DiMaio; David Baker
Journal:  Proteins       Date:  2016-02-24
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.