Literature DB >> 32283330

Fluid-like chromatin: Toward understanding the real chromatin organization present in the cell.

Kazuhiro Maeshima1, Sachiko Tamura2, Jeffrey C Hansen3, Yuji Itoh2.   

Abstract

Eukaryotic chromatin is a negatively charged polymer consisting of genomic DNA, histones, and various nonhistone proteins. Because of its highly charged character, the structure of chromatin varies greatly depending on the surrounding environment (i.e. cations etc.): from an extended 10-nm fiber, to a folded 30-nm fiber, to chromatin condensates/liquid-droplets. Over the last ten years, newly developed technologies have drastically shifted our view on chromatin from a static regular structure to a more irregular and dynamic one, locally like a fluid. Since no single imaging (or genomics) method can tell us everything and beautiful images (or models) can fool our minds, comprehensive analyses based on many technical approaches are important to capture actual chromatin organization inside the cell. Here we critically discuss our current view on chromatin and methodology used to support the view.
Copyright © 2020 The Authors. Published by Elsevier Ltd.. All rights reserved.

Keywords:  30-nm fiber; Chromatin; Hi-C; Liquid droplet; Nucleosome; Super-resolution imaging

Mesh:

Substances:

Year:  2020        PMID: 32283330     DOI: 10.1016/j.ceb.2020.02.016

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  27 in total

1.  Quantifying cell-cycle-dependent chromatin dynamics during interphase by live 3D tracking.

Authors:  Tal Naor; Yevgeni Nogin; Elias Nehme; Boris Ferdman; Lucien E Weiss; Onit Alalouf; Yoav Shechtman
Journal:  iScience       Date:  2022-04-04

2.  Histone H3 and H4 tails play an important role in nucleosome phase separation.

Authors:  Erin F Hammonds; Megan Cleland Harwig; Emeleeta A Paintsil; Emma A Tillison; R Blake Hill; Emma A Morrison
Journal:  Biophys Chem       Date:  2022-02-02       Impact factor: 2.352

Review 3.  The solid and liquid states of chromatin.

Authors:  Jeffrey C Hansen; Kazuhiro Maeshima; Michael J Hendzel
Journal:  Epigenetics Chromatin       Date:  2021-10-30       Impact factor: 4.954

4.  The interplay of chromatin phase separation and lamina interactions in nuclear organization.

Authors:  Rabia Laghmach; Michele Di Pierro; Davit A Potoyan
Journal:  Biophys J       Date:  2021-10-13       Impact factor: 4.033

Review 5.  Signaling in the crowded cell.

Authors:  Ruth Nussinov; Chung-Jung Tsai; Hyunbum Jang
Journal:  Curr Opin Struct Biol       Date:  2021-07-02       Impact factor: 6.809

6.  Nucleosome plasticity is a critical element of chromatin liquid-liquid phase separation and multivalent nucleosome interactions.

Authors:  Stephen E Farr; Esmae J Woods; Jerelle A Joseph; Adiran Garaizar; Rosana Collepardo-Guevara
Journal:  Nat Commun       Date:  2021-05-17       Impact factor: 14.919

Review 7.  Interphase epichromatin: last refuge for the 30-nm chromatin fiber?

Authors:  Peng Xu; Julia Mahamid; Marco Dombrowski; Wolfgang Baumeister; Ada L Olins; Donald E Olins
Journal:  Chromosoma       Date:  2021-06-05       Impact factor: 4.316

8.  A MULTISCALE VISION-ILLUSTRATIVE APPLICATIONS FROM BIOLOGY TO ENGINEERING.

Authors:  Tamar Schlick; Stephanie Portillo-Ledesma; Mischa Blaszczyk; Luke Dalessandro; Somnath Ghosh; Klaus Hackl; Cale Harnish; Shravan Kotha; Daniel Livescu; Arif Masud; Karel Matouš; Arturo Moyeda; Caglar Oskay; Jacob Fish
Journal:  Int J Multiscale Comput Eng       Date:  2021       Impact factor: 1.508

9.  Nucleosome-induced homology recognition in chromatin.

Authors:  Jonathan G Hedley; Vladimir B Teif; Alexei A Kornyshev
Journal:  J R Soc Interface       Date:  2021-06-16       Impact factor: 4.293

10.  Live imaging of chromatin distribution reveals novel principles of nuclear architecture and chromatin compartmentalization.

Authors:  Daria Amiad-Pavlov; Dana Lorber; Gaurav Bajpai; Adriana Reuveny; Francesco Roncato; Ronen Alon; Samuel Safran; Talila Volk
Journal:  Sci Adv       Date:  2021-06-02       Impact factor: 14.136

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