Literature DB >> 32281672

Deep learning for survival outcomes.

Jon Arni Steingrimsson1, Samantha Morrison1.   

Abstract

Deep learning is a class of machine learning algorithms that are popular for building risk prediction models. When observations are censored, the outcomes are only partially observed and standard deep learning algorithms cannot be directly applied. We develop a new class of deep learning algorithms for outcomes that are potentially censored. To account for censoring, the unobservable loss function used in the absence of censoring is replaced by a censoring unbiased transformation. The resulting class of algorithms can be used to estimate both survival probabilities and restricted mean survival. We show how the deep learning algorithms can be implemented by adapting software for uncensored data by using a form of response transformation. We provide comparisons of the proposed deep learning algorithms to existing risk prediction algorithms for predicting survival probabilities and restricted mean survival through both simulated datasets and analysis of data from breast cancer patients.
© 2020 John Wiley & Sons, Ltd.

Entities:  

Keywords:  L2-loss; censoring unbiased transformations; doubly robust estimation; machine learning; restricted mean survival; risk estimation

Mesh:

Year:  2020        PMID: 32281672      PMCID: PMC7334068          DOI: 10.1002/sim.8542

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  12 in total

1.  Assessment and comparison of prognostic classification schemes for survival data.

Authors:  E Graf; C Schmoor; W Sauerbrei; M Schumacher
Journal:  Stat Med       Date:  1999 Sep 15-30       Impact factor: 2.373

2.  The use of restricted mean survival time to estimate the treatment effect in randomized clinical trials when the proportional hazards assumption is in doubt.

Authors:  Patrick Royston; Mahesh K B Parmar
Journal:  Stat Med       Date:  2011-05-25       Impact factor: 2.373

Review 3.  Deep learning.

Authors:  Yann LeCun; Yoshua Bengio; Geoffrey Hinton
Journal:  Nature       Date:  2015-05-28       Impact factor: 49.962

4.  Gene expression profiling predicts clinical outcome of breast cancer.

Authors:  Laura J van 't Veer; Hongyue Dai; Marc J van de Vijver; Yudong D He; Augustinus A M Hart; Mao Mao; Hans L Peterse; Karin van der Kooy; Matthew J Marton; Anke T Witteveen; George J Schreiber; Ron M Kerkhoven; Chris Roberts; Peter S Linsley; René Bernards; Stephen H Friend
Journal:  Nature       Date:  2002-01-31       Impact factor: 49.962

5.  Censoring Unbiased Regression Trees and Ensembles.

Authors:  Jon Arni Steingrimsson; Liqun Diao; Robert L Strawderman
Journal:  J Am Stat Assoc       Date:  2018-07-09       Impact factor: 5.033

6.  A neural network model for survival data.

Authors:  D Faraggi; R Simon
Journal:  Stat Med       Date:  1995-01-15       Impact factor: 2.373

7.  ESTIMATING MEAN SURVIVAL TIME: WHEN IS IT POSSIBLE?

Authors:  Ying Ding; Bin Nan
Journal:  Scand Stat Theory Appl       Date:  2015-06-01       Impact factor: 1.396

8.  Predicting cancer outcomes from histology and genomics using convolutional networks.

Authors:  Pooya Mobadersany; Safoora Yousefi; Mohamed Amgad; David A Gutman; Jill S Barnholtz-Sloan; José E Velázquez Vega; Daniel J Brat; Lee A D Cooper
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-12       Impact factor: 11.205

9.  DeepSurv: personalized treatment recommender system using a Cox proportional hazards deep neural network.

Authors:  Jared L Katzman; Uri Shaham; Alexander Cloninger; Jonathan Bates; Tingting Jiang; Yuval Kluger
Journal:  BMC Med Res Methodol       Date:  2018-02-26       Impact factor: 4.615

10.  A scalable discrete-time survival model for neural networks.

Authors:  Michael F Gensheimer; Balasubramanian Narasimhan
Journal:  PeerJ       Date:  2019-01-25       Impact factor: 2.984

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  3 in total

1.  Inverse-Weighted Survival Games.

Authors:  Xintian Han; Mark Goldstein; Aahlad Puli; Thomas Wies; Adler J Perotte; Rajesh Ranganath
Journal:  Adv Neural Inf Process Syst       Date:  2021-12

Review 2.  A scoping methodological review of simulation studies comparing statistical and machine learning approaches to risk prediction for time-to-event data.

Authors:  Hayley Smith; Michael Sweeting; Tim Morris; Michael J Crowther
Journal:  Diagn Progn Res       Date:  2022-06-02

3.  Deep Neural Networks For Predicting Restricted Mean Survival Times.

Authors:  Lili Zhao
Journal:  Bioinformatics       Date:  2021-01-05       Impact factor: 6.937

  3 in total

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