| Literature DB >> 32280511 |
Sitthichok Mongkholkeaw1, Apisit Songsasen1, Tanwawan Duangthongyou1, Kittipong Chainok2, Songwut Suramitr3, Worawat Wattanathana4, Boontana Wannalerse1.
Abstract
In the title compound, C9H10ClNOS, the amide functional group -C(=O)NH- adopts a trans conformation with the four atoms nearly coplanar. This conformation promotes the formation of a C(4) hydrogen-bonded chain propagating along the [010] direction. The central part of the mol-ecule, including the six-membered ring, the S and N atoms, is fairly planar (r.m.s. deviation of 0.014). The terminal methyl group and the C(=O)CH2 group are slightly deviating out-of-plane while the terminal Cl atom is almost in-plane. Hirshfeld surface analysis of the title compound suggests that the most significant contacts in the crystal are H⋯H, H⋯Cl/Cl⋯H, H⋯C/C⋯H, H⋯O/O⋯H and H⋯S/S⋯H. π-π inter-actions between inversion-related mol-ecules also contribute to the crystal packing. DFT calculations have been performed to optimize the structure of the title compound using the CAM-B3LYP functional and the 6-311 G(d,p) basis set. The theoretical absorption spectrum of the title compound was calculated using the TD-DFT method. The analysis of frontier orbitals revealed that the π-π* electronic transition was the major contributor to the absorption peak in the electronic spectrum. © Mongkholkeaw et al. 2020.Entities:
Keywords: 4-methylthioaniline; chloroacetyl chloride; crystal structure; hydrogen bonds; π–π interactions
Year: 2020 PMID: 32280511 PMCID: PMC7133040 DOI: 10.1107/S2056989020002960
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O1i | 0.82 (2) | 2.06 (3) | 2.875 (2) | 174 (3) |
| C1—H1 | 0.97 | 2.57 | 3.319 (3) | 135 |
| C4—H4⋯O1 | 0.93 | 2.32 | 2.903 (3) | 121 |
Symmetry code: (i) .
Figure 2The molecular packing in the title compound: (a) view of the unit-cell contents shown in projection down the a axis; (b) view of the supramolecular chain perpendicular to the b axis originated by the N—H⋯O hydrogen bonding (shown as red dashed lines). Displacement ellipsoids are drawn at the 50% probability level.
Figure 3View of the three-dimensional Hirshfeld surface of the title compound plotted over d norm in the range −0.5588 to 1.0138 a.u.
Figure 4The shape-index Hirshfeld surface of the title compound plotted in the range from −1.0000 to 1.0000 a.u.
Figure 5The full two-dimensional fingerprint plot for the title compound, showing (a) all interactions and those delineated into (b) H⋯H, (c) H⋯Cl/ Cl⋯H, (d) H⋯C/C⋯H, (e) H⋯O/O⋯H and (f) H⋯S/S⋯H interactions. The d i and d e values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface.
The electronic absorption spectrum of the title compound calculated by the TD-CAM-B3LYP/6–311G(d,p) method
| Excited states | Excitation energy | Configurations composition | ||
|---|---|---|---|---|
| eV | nm |
| ||
|
| 4.80 | 258 | 0.0354 | HOMO→ |
|
| 4.95 | 250 | 0.7144 | HOMO→LUMO (91%) |
|
| 5.55 | 224 | 0.0000 | HOMO→ |
|
| 5.63 | 220 | 0.0005 |
|
|
| 6.35 | 195 | 0.1378 |
|
Experimental details
| Crystal data | |
| Chemical formula | C9H10ClNOS |
|
| 215.69 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 296 |
|
| 9.6659 (7), 14.0682 (11), 14.4869 (13) |
|
| 1970.0 (3) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 0.56 |
| Crystal size (mm) | 0.12 × 0.10 × 0.08 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.686, 0.746 |
| No. of measured, independent and observed [ | 21994, 2438, 1722 |
|
| 0.085 |
| (sin θ/λ)max (Å−1) | 0.667 |
| Refinement | |
|
| 0.047, 0.127, 1.02 |
| No. of reflections | 2438 |
| No. of parameters | 123 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.51, −0.41 |
Computer programs: APEX2 and SAINT (Bruker, 2016 ▸), SHELXT2014/5 (Sheldrick, 2015a ▸), SHELXL2018/3 (Sheldrick, 2015b ▸), OLEX2 (Dolomanov et al., 2009 ▸) and Mercury (Macrae et al., 2020 ▸).
Figure 6The molecular orbitals (MO) regarding information of the absorption spectrum of the title compound at the S 0→S 1 and S 0→S 2 states calculated by the CAM-B3LYP/6–311 G(d,p) method.
| C9H10ClNOS | |
| Mo | |
| Orthorhombic, | Cell parameters from 3435 reflections |
| θ = 2.8–26.2° | |
| µ = 0.56 mm−1 | |
| Block, light brown | |
| 0.12 × 0.10 × 0.08 mm | |
| Bruker APEXII CCD diffractometer | 1722 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2016) | θmax = 28.3°, θmin = 2.8° |
| 21994 measured reflections | |
| 2438 independent reflections |
| Refinement on | Primary atom site location: dual |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2438 reflections | Δρmax = 0.51 e Å−3 |
| 123 parameters | Δρmin = −0.41 e Å−3 |
| 0 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Cl1 | 0.44778 (8) | 0.40070 (6) | 0.90711 (5) | 0.0685 (3) | |
| S1 | 0.52668 (8) | 0.73979 (6) | 0.33195 (5) | 0.0612 (2) | |
| O1 | 0.36226 (15) | 0.51663 (13) | 0.74128 (12) | 0.0498 (4) | |
| N1 | 0.58369 (17) | 0.53698 (14) | 0.69210 (13) | 0.0364 (4) | |
| H1 | 0.663 (3) | 0.5277 (17) | 0.7080 (18) | 0.044* | |
| C3 | 0.56559 (19) | 0.58332 (15) | 0.60636 (15) | 0.0333 (4) | |
| C7 | 0.6767 (2) | 0.66353 (17) | 0.47953 (16) | 0.0423 (5) | |
| H7 | 0.757186 | 0.685406 | 0.451533 | 0.051* | |
| C2 | 0.4871 (2) | 0.51212 (16) | 0.75445 (16) | 0.0370 (5) | |
| C8 | 0.6844 (2) | 0.61629 (17) | 0.56270 (16) | 0.0394 (5) | |
| H8 | 0.770224 | 0.606313 | 0.590012 | 0.047* | |
| C6 | 0.5498 (2) | 0.67873 (16) | 0.43719 (16) | 0.0392 (5) | |
| C4 | 0.4384 (2) | 0.59718 (17) | 0.56390 (17) | 0.0404 (5) | |
| H4 | 0.357922 | 0.574908 | 0.591632 | 0.048* | |
| C5 | 0.4319 (2) | 0.64410 (18) | 0.48042 (17) | 0.0440 (5) | |
| H5 | 0.346335 | 0.652779 | 0.452346 | 0.053* | |
| C1 | 0.5487 (2) | 0.4838 (2) | 0.84654 (17) | 0.0477 (6) | |
| H1A | 0.559753 | 0.540211 | 0.884279 | 0.057* | |
| H1B | 0.639951 | 0.457030 | 0.836228 | 0.057* | |
| C9 | 0.6958 (3) | 0.7388 (2) | 0.28174 (19) | 0.0566 (7) | |
| H9A | 0.691402 | 0.764360 | 0.220355 | 0.085* | |
| H9B | 0.729678 | 0.674728 | 0.279361 | 0.085* | |
| H9C | 0.757047 | 0.776878 | 0.318558 | 0.085* |
| Cl1 | 0.0643 (5) | 0.0892 (6) | 0.0520 (4) | −0.0232 (4) | 0.0053 (3) | 0.0168 (4) |
| S1 | 0.0566 (4) | 0.0723 (5) | 0.0548 (4) | 0.0139 (3) | −0.0006 (3) | 0.0206 (4) |
| O1 | 0.0241 (7) | 0.0781 (12) | 0.0471 (10) | −0.0002 (7) | 0.0034 (6) | 0.0045 (9) |
| N1 | 0.0227 (8) | 0.0513 (11) | 0.0353 (10) | −0.0003 (7) | 0.0005 (7) | −0.0016 (8) |
| C3 | 0.0295 (9) | 0.0378 (11) | 0.0327 (11) | 0.0009 (8) | −0.0001 (8) | −0.0055 (9) |
| C7 | 0.0332 (11) | 0.0514 (14) | 0.0423 (13) | −0.0058 (9) | 0.0034 (9) | 0.0001 (11) |
| C2 | 0.0279 (10) | 0.0441 (12) | 0.0389 (12) | −0.0001 (8) | 0.0028 (8) | −0.0050 (10) |
| C8 | 0.0274 (10) | 0.0517 (14) | 0.0391 (12) | −0.0021 (9) | −0.0020 (8) | −0.0020 (10) |
| C6 | 0.0400 (12) | 0.0391 (12) | 0.0385 (12) | 0.0028 (9) | −0.0003 (9) | −0.0021 (10) |
| C4 | 0.0266 (10) | 0.0506 (13) | 0.0440 (13) | −0.0006 (9) | 0.0008 (9) | −0.0011 (10) |
| C5 | 0.0299 (10) | 0.0548 (14) | 0.0475 (14) | 0.0058 (9) | −0.0057 (9) | −0.0015 (11) |
| C1 | 0.0348 (11) | 0.0638 (16) | 0.0444 (14) | −0.0040 (10) | 0.0040 (10) | 0.0069 (12) |
| C9 | 0.0628 (16) | 0.0592 (17) | 0.0478 (15) | −0.0048 (12) | 0.0032 (12) | 0.0110 (12) |
| Cl1—C1 | 1.757 (2) | C2—C1 | 1.515 (3) |
| S1—C6 | 1.764 (2) | C8—H8 | 0.9300 |
| S1—C9 | 1.789 (3) | C6—C5 | 1.388 (3) |
| O1—C2 | 1.223 (2) | C4—H4 | 0.9300 |
| N1—H1 | 0.82 (2) | C4—C5 | 1.379 (3) |
| N1—C3 | 1.414 (3) | C5—H5 | 0.9300 |
| N1—C2 | 1.345 (3) | C1—H1A | 0.9700 |
| C3—C8 | 1.390 (3) | C1—H1B | 0.9700 |
| C3—C4 | 1.388 (3) | C9—H9A | 0.9600 |
| C7—H7 | 0.9300 | C9—H9B | 0.9600 |
| C7—C8 | 1.378 (3) | C9—H9C | 0.9600 |
| C7—C6 | 1.388 (3) | ||
| C6—S1—C9 | 103.42 (12) | C3—C4—H4 | 120.1 |
| C3—N1—H1 | 116.1 (19) | C5—C4—C3 | 119.7 (2) |
| C2—N1—H1 | 115.1 (18) | C5—C4—H4 | 120.1 |
| C2—N1—C3 | 128.60 (18) | C6—C5—H5 | 119.1 |
| C8—C3—N1 | 116.83 (18) | C4—C5—C6 | 121.8 (2) |
| C4—C3—N1 | 124.31 (18) | C4—C5—H5 | 119.1 |
| C4—C3—C8 | 118.9 (2) | Cl1—C1—H1A | 108.9 |
| C8—C7—H7 | 119.7 | Cl1—C1—H1B | 108.9 |
| C8—C7—C6 | 120.6 (2) | C2—C1—Cl1 | 113.36 (16) |
| C6—C7—H7 | 119.7 | C2—C1—H1A | 108.9 |
| O1—C2—N1 | 124.5 (2) | C2—C1—H1B | 108.9 |
| O1—C2—C1 | 122.62 (19) | H1A—C1—H1B | 107.7 |
| N1—C2—C1 | 112.76 (18) | S1—C9—H9A | 109.5 |
| C3—C8—H8 | 119.5 | S1—C9—H9B | 109.5 |
| C7—C8—C3 | 120.9 (2) | S1—C9—H9C | 109.5 |
| C7—C8—H8 | 119.5 | H9A—C9—H9B | 109.5 |
| C7—C6—S1 | 124.67 (18) | H9A—C9—H9C | 109.5 |
| C7—C6—C5 | 118.1 (2) | H9B—C9—H9C | 109.5 |
| C5—C6—S1 | 117.19 (17) | ||
| S1—C6—C5—C4 | −178.58 (19) | C2—N1—C3—C8 | 168.6 (2) |
| O1—C2—C1—Cl1 | 32.9 (3) | C2—N1—C3—C4 | −11.7 (4) |
| N1—C3—C8—C7 | −179.1 (2) | C8—C3—C4—C5 | −0.8 (3) |
| N1—C3—C4—C5 | 179.4 (2) | C8—C7—C6—S1 | 178.92 (18) |
| N1—C2—C1—Cl1 | −150.97 (18) | C8—C7—C6—C5 | −0.7 (4) |
| C3—N1—C2—O1 | 8.9 (4) | C6—C7—C8—C3 | −0.4 (4) |
| C3—N1—C2—C1 | −167.2 (2) | C4—C3—C8—C7 | 1.2 (3) |
| C3—C4—C5—C6 | −0.3 (4) | C9—S1—C6—C7 | 18.0 (2) |
| C7—C6—C5—C4 | 1.1 (4) | C9—S1—C6—C5 | −162.3 (2) |
| H··· | ||||
| N1—H1···O1i | 0.82 (2) | 2.06 (3) | 2.875 (2) | 174 (3) |
| C1—H1 | 0.97 | 2.57 | 3.319 (3) | 135 |
| C4—H4···O1 | 0.93 | 2.32 | 2.903 (3) | 121 |