Literature DB >> 32278263

Systems metabolomics: from metabolomic snapshots to design principles.

Chiara Damiani1, Daniela Gaglio2, Elena Sacco1, Lilia Alberghina1, Marco Vanoni3.   

Abstract

Metabolomics is a rapidly expanding technology that finds increasing application in a variety of fields, form metabolic disorders to cancer, from nutrition and wellness to design and optimization of cell factories. The integration of metabolic snapshots with metabolic fluxes, physiological readouts, metabolic models, and knowledge-informed Artificial Intelligence tools, is required to obtain a system-level understanding of metabolism. The emerging power of multi-omic approaches and the development of integrated experimental and computational tools, able to dissect metabolic features at cellular and subcellular resolution, provide unprecedented opportunities for understanding design principles of metabolic (dis)regulation and for the development of precision therapies in multifactorial diseases, such as cancer and neurodegenerative diseases.
Copyright © 2020 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Entities:  

Year:  2020        PMID: 32278263     DOI: 10.1016/j.copbio.2020.02.013

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  13 in total

1.  Simulating single-cell metabolism using a stochastic flux-balance analysis algorithm.

Authors:  David S Tourigny; Arthur P Goldberg; Jonathan R Karr
Journal:  Biophys J       Date:  2021-10-30       Impact factor: 4.033

2.  Disruption of redox homeostasis for combinatorial drug efficacy in K-Ras tumors as revealed by metabolic connectivity profiling.

Authors:  Daniela Gaglio; Marcella Bonanomi; Silvia Valtorta; Rohit Bharat; Marilena Ripamonti; Federica Conte; Giulia Fiscon; Nicole Righi; Elisabetta Napodano; Federico Papa; Isabella Raccagni; Seth J Parker; Ingrid Cifola; Tania Camboni; Paola Paci; Anna Maria Colangelo; Marco Vanoni; Christian M Metallo; Rosa Maria Moresco; Lilia Alberghina
Journal:  Cancer Metab       Date:  2020-09-29

3.  Closing the gap between in vivo and in vitro omics: using QA/QC to strengthen ex vivo NMR metabolomics.

Authors:  Amith Sadananda Maroli; Robert Powers
Journal:  NMR Biomed       Date:  2021-08-08       Impact factor: 4.044

4.  Profiling and Targeting of Energy and Redox Metabolism in Grade 2 Bladder Cancer Cells with Different Invasiveness Properties.

Authors:  Valentina Pasquale; Giacomo Ducci; Gloria Campioni; Adria Ventrici; Chiara Assalini; Stefano Busti; Marco Vanoni; Riccardo Vago; Elena Sacco
Journal:  Cells       Date:  2020-12-11       Impact factor: 6.600

Review 5.  The remodel of the "central dogma": a metabolomics interaction perspective.

Authors:  Gilson Costa Dos Santos; Mariana Renovato-Martins; Natália Mesquita de Brito
Journal:  Metabolomics       Date:  2021-05-09       Impact factor: 4.290

6.  On the Use of Topological Features of Metabolic Networks for the Classification of Cancer Samples.

Authors:  Jeaneth Machicao; Francesco Craighero; Davide Maspero; Fabrizio Angaroni; Chiara Damiani; Alex Graudenzi; Marco Antoniotti; Odemir M Bruno
Journal:  Curr Genomics       Date:  2021-02       Impact factor: 2.236

Review 7.  The Glioblastoma Microenvironment: Morphology, Metabolism, and Molecular Signature of Glial Dynamics to Discover Metabolic Rewiring Sequence.

Authors:  Assunta Virtuoso; Roberto Giovannoni; Ciro De Luca; Francesca Gargano; Michele Cerasuolo; Nicola Maggio; Marialuisa Lavitrano; Michele Papa
Journal:  Int J Mol Sci       Date:  2021-03-24       Impact factor: 5.923

Review 8.  Metabolomic Approaches to Study Chemical Exposure-Related Metabolism Alterations in Mammalian Cell Cultures.

Authors:  Aneta Balcerczyk; Christian Damblon; Bénédicte Elena-Herrmann; Baptiste Panthu; Gilles J P Rautureau
Journal:  Int J Mol Sci       Date:  2020-09-18       Impact factor: 5.923

Review 9.  Metabolomic Biomarkers for Detection, Prognosis and Identifying Recurrence in Endometrial Cancer.

Authors:  Kelechi Njoku; Caroline J Sutton; Anthony D Whetton; Emma J Crosbie
Journal:  Metabolites       Date:  2020-07-31

Review 10.  Metabolomics-Guided Elucidation of Plant Abiotic Stress Responses in the 4IR Era: An Overview.

Authors:  Morena M Tinte; Kekeletso H Chele; Justin J J van der Hooft; Fidele Tugizimana
Journal:  Metabolites       Date:  2021-07-08
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