Literature DB >> 32277175

Genome-wide meta-analysis identifies novel loci associated with age-related macular degeneration.

Xikun Han1,2, Puya Gharahkhani3, Paul Mitchell4, Gerald Liew4, Alex W Hewitt5,6, Stuart MacGregor3.   

Abstract

Age-related macular degeneration (AMD) is the leading cause of irreversible blindness among the elderly population. To accelerate the understanding of the genetics of AMD, we conducted a meta-analysis of genome-wide association studies (GWAS) combining data from the International AMD Genomics Consortium AMD-2016 GWAS (16,144 advanced AMD cases and 17,832 controls), AMD-2013 GWAS (17,181 cases and 60,074 controls), and new data on 4017 AMD cases and 14,984 controls from Genetic Epidemiology Research on Aging study. We identified 12 novel AMD loci near or within C4BPA-CD55, ZNF385B, ZBTB38, NFKB1, LINC00461, ADAM19, CPN1, ACSL5, CSK, RLBP1, CLUL1, and LBP. We then replicated the associations of the novel loci in independent cohorts, UK Biobank (5860 cases and 126,726 controls) and FinnGen (1266 cases and 47,560 control). In general, the concordance in effect sizes was very high (correlation in effect size estimates 0.89), 11 of 12 novel loci were in the expected direction, 5 were associated with AMD at a nominal significance level, and rs3825991 (near gene RLBP1) after Bonferroni correction. We identified an additional 21 novel genes using a gene-based test. Most of the novel genes are expressed in retinal tissue and could be involved in the pathogenesis of AMD (i.e., complement, inflammation, and lipid pathways). These findings enhance our understanding of the genetic architecture of AMD and shed light on the biological process underlying AMD pathogenesis.

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Year:  2020        PMID: 32277175     DOI: 10.1038/s10038-020-0750-x

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.172


  18 in total

1.  Cell-specific cis-regulatory elements and mechanisms of non-coding genetic disease in human retina and retinal organoids.

Authors:  Eric D Thomas; Andrew E Timms; Sarah Giles; Sarah Harkins-Perry; Pin Lyu; Thanh Hoang; Jiang Qian; Victoria E Jackson; Melanie Bahlo; Seth Blackshaw; Martin Friedlander; Kevin Eade; Timothy J Cherry
Journal:  Dev Cell       Date:  2022-03-17       Impact factor: 13.417

Review 2.  Dyslipidemia in age-related macular degeneration.

Authors:  Jonathan B Lin; Omar A Halawa; Deeba Husain; Joan W Miller; Demetrios G Vavvas
Journal:  Eye (Lond)       Date:  2022-01-11       Impact factor: 4.456

3.  HBEGF-TNF induce a complex outer retinal pathology with photoreceptor cell extrusion in human organoids.

Authors:  Manuela Völkner; Felix Wagner; Lisa Maria Steinheuer; Madalena Carido; Thomas Kurth; Ali Yazbeck; Jana Schor; Stephanie Wieneke; Lynn J A Ebner; Claudia Del Toro Runzer; David Taborsky; Katja Zoschke; Marlen Vogt; Sebastian Canzler; Andreas Hermann; Shahryar Khattak; Jörg Hackermüller; Mike O Karl
Journal:  Nat Commun       Date:  2022-10-19       Impact factor: 17.694

4.  Pleiotropic Locus 15q24.1 Reveals a Gender-Specific Association with Neovascular but Not Atrophic Age-Related Macular Degeneration (AMD).

Authors:  Christina Kiel; Tobias Strunz; Felix Grassmann; Bernhard H F Weber
Journal:  Cells       Date:  2020-10-08       Impact factor: 6.600

5.  Association between NF-kB polymorphism and age-related macular degeneration in a high-altitude population.

Authors:  Yan Xin; Kang Zefeng; Li Ling; Guan Ruijuan
Journal:  PLoS One       Date:  2021-06-08       Impact factor: 3.752

6.  A Multi-Omics Approach Identifies Key Regulatory Pathways Induced by Long-Term Zinc Supplementation in Human Primary Retinal Pigment Epithelium.

Authors:  Eszter Emri; Elod Kortvely; Sascha Dammeier; Franziska Klose; David Simpson; Eye-Risk Consortium; Anneke I Den Hollander; Marius Ueffing; Imre Lengyel
Journal:  Nutrients       Date:  2020-10-06       Impact factor: 5.717

7.  Multi-trait GWAS using imputed high-density genotypes from whole-genome sequencing identifies genes associated with body traits in Nile tilapia.

Authors:  Grazyella M Yoshida; José M Yáñez
Journal:  BMC Genomics       Date:  2021-01-15       Impact factor: 3.969

Review 8.  Age-Related Macular Degeneration Revisited: From Pathology and Cellular Stress to Potential Therapies.

Authors:  Majda Hadziahmetovic; Goldis Malek
Journal:  Front Cell Dev Biol       Date:  2021-01-25

9.  Autophagy Genes for Wet Age-Related Macular Degeneration in a Finnish Case-Control Study.

Authors:  Jussi J Paterno; Ali Koskela; Juha M T Hyttinen; Elina Vattulainen; Ewelina Synowiec; Raimo Tuuminen; Cezary Watala; Janusz Blasiak; Kai Kaarniranta
Journal:  Genes (Basel)       Date:  2020-11-06       Impact factor: 4.096

10.  Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.

Authors:  Thomas W Winkler; Felix Grassmann; Caroline Brandl; Christina Kiel; Felix Günther; Tobias Strunz; Lorraine Weidner; Martina E Zimmermann; Christina A Korb; Alicia Poplawski; Alexander K Schuster; Martina Müller-Nurasyid; Annette Peters; Franziska G Rauscher; Tobias Elze; Katrin Horn; Markus Scholz; Marisa Cañadas-Garre; Amy Jayne McKnight; Nicola Quinn; Ruth E Hogg; Helmut Küchenhoff; Iris M Heid; Klaus J Stark; Bernhard H F Weber
Journal:  BMC Med Genomics       Date:  2020-08-26       Impact factor: 3.063

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