Literature DB >> 32272169

Biohorology and biomarkers of aging: Current state-of-the-art, challenges and opportunities.

Fedor Galkin1, Polina Mamoshina2, Alex Aliper3, João Pedro de Magalhães4, Vadim N Gladyshev5, Alex Zhavoronkov6.   

Abstract

The aging process results in multiple traceable footprints, which can be quantified and used to estimate an organism's age. Examples of such aging biomarkers include epigenetic changes, telomere attrition, and alterations in gene expression and metabolite concentrations. More than a dozen aging clocks use molecular features to predict an organism's age, each of them utilizing different data types and training procedures. Here, we offer a detailed comparison of existing mouse and human aging clocks, discuss their technological limitations and the underlying machine learning algorithms. We also discuss promising future directions of research in biohorology - the science of measuring the passage of time in living systems. Overall, we expect deep learning, deep neural networks and generative approaches to be the next power tools in this timely and actively developing field.
Copyright © 2020 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Aging; Aging clock; Biogerontology; Deep learning; Neural network

Year:  2020        PMID: 32272169     DOI: 10.1016/j.arr.2020.101050

Source DB:  PubMed          Journal:  Ageing Res Rev        ISSN: 1568-1637            Impact factor:   10.895


  25 in total

Review 1.  Measuring biological age using omics data.

Authors:  Jarod Rutledge; Hamilton Oh; Tony Wyss-Coray
Journal:  Nat Rev Genet       Date:  2022-06-17       Impact factor: 53.242

2.  Adapting Blood DNA Methylation Aging Clocks for Use in Saliva Samples With Cell-type Deconvolution.

Authors:  Fedor Galkin; Kirill Kochetov; Polina Mamoshina; Alex Zhavoronkov
Journal:  Front Aging       Date:  2021-07-29

3.  Considerations Regarding Public Use of Longevity Interventions.

Authors:  Yasmine J Liu; Rebecca L McIntyre; Georges E Janssens
Journal:  Front Aging       Date:  2022-04-25

4.  Biological Age Prediction From Wearable Device Movement Data Identifies Nutritional and Pharmacological Interventions for Healthy Aging.

Authors:  Rebecca L McIntyre; Mizanur Rahman; Siva A Vanapalli; Riekelt H Houtkooper; Georges E Janssens
Journal:  Front Aging       Date:  2021-07-15

5.  Association between telomere length, frailty and death in older adults.

Authors:  Fernando Rodríguez-Artalejo; Leocadio Rodríguez-Mañas; Mariam El Assar; Javier Angulo; José A Carnicero; Stefan Walter; Francisco J García-García
Journal:  Geroscience       Date:  2020-11-15       Impact factor: 7.713

6.  Data mining of human plasma proteins generates a multitude of highly predictive aging clocks that reflect different aspects of aging.

Authors:  Benoit Lehallier; Maxim N Shokhirev; Tony Wyss-Coray; Adiv A Johnson
Journal:  Aging Cell       Date:  2020-10-08       Impact factor: 9.304

7.  Modeling transcriptomic age using knowledge-primed artificial neural networks.

Authors:  Nicholas Holzscheck; Cassandra Falckenhayn; Jörn Söhle; Boris Kristof; Ralf Siegner; André Werner; Janka Schössow; Clemens Jürgens; Henry Völzke; Horst Wenck; Marc Winnefeld; Elke Grönniger; Lars Kaderali
Journal:  NPJ Aging Mech Dis       Date:  2021-06-01

8.  DeepMAge: A Methylation Aging Clock Developed with Deep Learning.

Authors:  Fedor Galkin; Polina Mamoshina; Kirill Kochetov; Denis Sidorenko; Alex Zhavoronkov
Journal:  Aging Dis       Date:  2021-08-01       Impact factor: 6.745

9.  Psychological aging, depression, and well-being.

Authors:  Maria Mitina; Sergey Young; Alex Zhavoronkov
Journal:  Aging (Albany NY)       Date:  2020-09-18       Impact factor: 5.682

10.  Epigenetic clocks reveal a rejuvenation event during embryogenesis followed by aging.

Authors:  Csaba Kerepesi; Bohan Zhang; Sang-Goo Lee; Alexandre Trapp; Vadim N Gladyshev
Journal:  Sci Adv       Date:  2021-06-25       Impact factor: 14.136

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