Literature DB >> 32268179

Rapid diagnosis of largemouth bass ranavirus in fish samples using the loop-mediated isothermal amplification method.

Qinchao Zhu1, Yi Wang1, Junli Feng2.   

Abstract

Largemouth bass ranavirus (LMBV) has been recognized as the causative pathogen responsible for infectious skin ulcerative syndrome in cultured largemouth bass in China. A fast and simple LMBV detection method is urgently needed. Here, a loop-mediated isothermal amplification (LAMP) assay was established for the detection of this virus using primers targeting the major capsid protein gene of LMBV. The amplification conditions were optimized; the assay was specific for the diagnosis of LMBV, as there was no cross-reactivity with other four Iridoviridae viruses (large yellow croaker iridovirus, Singapore grouper iridovirus, tiger frog virus, and soft-shelled turtle iridovirus), grass carp reovirus, white spot syndrome virus, or healthy largemouth bass. The sensitivity of the LAMP assay was found to be 8.55 × 101 copies/μL of LMBV DNA, which was 10-fold higher than that of the conventional PCR. Application of the LAMP assay was evaluated using 10 clinical samples, and the results indicated the reliability of the test as a rapid, field diagnostic tool for LMBV detection. Thus, the simplicity and nearly instrument-free LAMP method provides an alternative for rapid and sensitive detection of LMBV and has great potential for early diagnosis of LMBV infection in the farm.
Copyright © 2020. Published by Elsevier Ltd.

Entities:  

Keywords:  Detection; Largemouth bass ranavirus; Loop-mediated isothermal amplification; Major capsid protein gene

Mesh:

Year:  2020        PMID: 32268179     DOI: 10.1016/j.mcp.2020.101569

Source DB:  PubMed          Journal:  Mol Cell Probes        ISSN: 0890-8508            Impact factor:   2.365


  3 in total

1.  A Novel Sandwich ELASA Based on Aptamer for Detection of Largemouth Bass Virus (LMBV).

Authors:  Xinyue Zhang; Zemiao Zhang; Junrong Li; Xiaohong Huang; Jingguang Wei; Jiahui Yang; Lingfeng Guan; Xiaozhi Wen; Shaowen Wang; Qiwei Qin
Journal:  Viruses       Date:  2022-04-30       Impact factor: 5.818

2.  Selection and Characterization of ssDNA Aptamers Targeting Largemouth Bass Virus Infected Cells With Antiviral Activities.

Authors:  Qing Yu; Mengmeng Li; Mingzhu Liu; Shuaishuai Huang; Gaoxue Wang; Taixia Wang; Pengfei Li
Journal:  Front Microbiol       Date:  2021-12-17       Impact factor: 5.640

3.  Chromosome-level genome assembly of largemouth bass (Micropterus salmoides) using PacBio and Hi-C technologies.

Authors:  Kuo He; Liulan Zhao; Zihao Yuan; Adelino Canario; Qiao Liu; Siyi Chen; Jiazhong Guo; Wei Luo; Haoxiao Yan; Dongmei Zhang; Lisen Li; Song Yang
Journal:  Sci Data       Date:  2022-08-06       Impact factor: 8.501

  3 in total

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