Literature DB >> 32265298

Cryo-EM, X-ray diffraction, and atomistic simulations reveal determinants for the formation of a supramolecular myelin-like proteolipid lattice.

Salla Ruskamo1, Oda C Krokengen2, Julia Kowal3, Tuomo Nieminen4, Mari Lehtimäki5, Arne Raasakka2, Venkata P Dandey3, Ilpo Vattulainen6, Henning Stahlberg3, Petri Kursula7.   

Abstract

Myelin protein P2 is a peripheral membrane protein of the fatty acid-binding protein family that functions in the formation and maintenance of the peripheral nerve myelin sheath. Several P2 gene mutations cause human Charcot-Marie-Tooth neuropathy, but the mature myelin sheath assembly mechanism is unclear. Here, cryo-EM of myelin-like proteolipid multilayers revealed an ordered three-dimensional (3D) lattice of P2 molecules between stacked lipid bilayers, visualizing supramolecular assembly at the myelin major dense line. The data disclosed that a single P2 layer is inserted between two bilayers in a tight intermembrane space of ∼3 nm, implying direct interactions between P2 and two membrane surfaces. X-ray diffraction from P2-stacked bicelle multilayers revealed lateral protein organization, and surface mutagenesis of P2 coupled with structure-function experiments revealed a role for both the portal region of P2 and its opposite face in membrane interactions. Atomistic molecular dynamics simulations of P2 on model membrane surfaces suggested that Arg-88 is critical for P2-membrane interactions, in addition to the helical lid domain. Negatively charged lipid headgroups stably anchored P2 on the myelin-like bilayer surface. Membrane binding may be accompanied by opening of the P2 β-barrel structure and ligand exchange with the apposing bilayer. Our results provide an unprecedented view into an ordered, multilayered biomolecular membrane system induced by the presence of a peripheral membrane protein from human myelin. This is an important step toward deciphering the 3D assembly of a mature myelin sheath at the molecular level.
© 2020 Ruskamo et al.

Entities:  

Keywords:  Charcot-Marie-Tooth disease; membrane bilayer; membrane biophysics; membrane protein; membrane structure; molecular dynamics; myelin; neuropathy; protein structure; proteolipid

Mesh:

Substances:

Year:  2020        PMID: 32265298      PMCID: PMC7324508          DOI: 10.1074/jbc.RA120.013087

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  59 in total

1.  Production, crystallization and neutron diffraction of fully deuterated human myelin peripheral membrane protein P2.

Authors:  Saara Laulumaa; Matthew P Blakeley; Arne Raasakka; Martine Moulin; Michael Härtlein; Petri Kursula
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-10-23       Impact factor: 1.056

2.  Canonical sampling through velocity rescaling.

Authors:  Giovanni Bussi; Davide Donadio; Michele Parrinello
Journal:  J Chem Phys       Date:  2007-01-07       Impact factor: 3.488

3.  Myelin sheaths are formed with proteins that originated in vertebrate lineages.

Authors:  Robert M Gould; Todd Oakley; Jared V Goldstone; Jason C Dugas; Scott T Brady; Alexander Gow
Journal:  Neuron Glia Biol       Date:  2008-05

4.  Immunocytochemical localization of rat peripheral nervous system myelin proteins: P2 protein is not a component of all peripheral nervous system myelin sheaths.

Authors:  B D Trapp; L J McIntyre; R H Quarles; N H Sternberger; H D Webster
Journal:  Proc Natl Acad Sci U S A       Date:  1979-07       Impact factor: 11.205

5.  Ultrastructural localization of P2 protein in actively myelinating rat Schwann cells.

Authors:  B D Trapp; M Dubois-Dalcq; R H Quarles
Journal:  J Neurochem       Date:  1984-10       Impact factor: 5.372

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Atomic resolution view into the structure-function relationships of the human myelin peripheral membrane protein P2.

Authors:  Salla Ruskamo; Ravi P Yadav; Satyan Sharma; Mari Lehtimäki; Saara Laulumaa; Shweta Aggarwal; Mikael Simons; Jochen Bürck; Anne S Ulrich; André H Juffer; Inari Kursula; Petri Kursula
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-12-31

8.  ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions.

Authors:  D Franke; M V Petoukhov; P V Konarev; A Panjkovich; A Tuukkanen; H D T Mertens; A G Kikhney; N R Hajizadeh; J M Franklin; C M Jeffries; D I Svergun
Journal:  J Appl Crystallogr       Date:  2017-06-26       Impact factor: 3.304

9.  Molecular mechanisms of Charcot-Marie-Tooth neuropathy linked to mutations in human myelin protein P2.

Authors:  Salla Ruskamo; Tuomo Nieminen; Cecilie K Kristiansen; Guro H Vatne; Anne Baumann; Erik I Hallin; Arne Raasakka; Päivi Joensuu; Ulrich Bergmann; Ilpo Vattulainen; Petri Kursula
Journal:  Sci Rep       Date:  2017-07-26       Impact factor: 4.379

10.  Structure and dynamics of a human myelin protein P2 portal region mutant indicate opening of the β barrel in fatty acid binding proteins.

Authors:  Saara Laulumaa; Tuomo Nieminen; Arne Raasakka; Oda C Krokengen; Anushik Safaryan; Erik I Hallin; Guillaume Brysbaert; Marc F Lensink; Salla Ruskamo; Ilpo Vattulainen; Petri Kursula
Journal:  BMC Struct Biol       Date:  2018-06-25
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  3 in total

1.  A myelin sheath protein forming its lattice.

Authors:  Hideaki Tsuge
Journal:  J Biol Chem       Date:  2020-06-26       Impact factor: 5.157

2.  Human myelin proteolipid protein structure and lipid bilayer stacking.

Authors:  Salla Ruskamo; Arne Raasakka; Jan Skov Pedersen; Anne Martel; Karel Škubník; Tamim Darwish; Lionel Porcar; Petri Kursula
Journal:  Cell Mol Life Sci       Date:  2022-07-12       Impact factor: 9.207

3.  How Does Protein Zero Assemble Compact Myelin?

Authors:  Arne Raasakka; Petri Kursula
Journal:  Cells       Date:  2020-08-04       Impact factor: 6.600

  3 in total

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