Literature DB >> 32258388

A Glioblastoma Genomics Primer for Clinicians.

John D Patterson1, Thidathip Wongsurawat2, Analiz Rodriguez1.   

Abstract

New discoveries in Glioblastoma (GBM) biology have been made using genomics data. Genomic markers are routinely integrated into clinical neurosurgical practice. In this manuscript, we review the fundamentals of genomics such as the differences between first, second, and third generation sequencing technology. We also review the impact of single cell genomics in understanding the complex heterogenous GBM microenvironment. Finally, we will discuss advances in epigenetics that have lent insights into treatment resistance. The integration of genomics into neuro-oncology clinical practice is routine and will continue to expand with the expansion of precision of medicine. We provide a primer for clinicians.

Entities:  

Keywords:  Single-Cell Analysis; epigenetics; genomics; glioblastoma; microenvironment; tumor microenvironment

Year:  2020        PMID: 32258388      PMCID: PMC7111506          DOI: 10.18103/mra.v8i2.2034

Source DB:  PubMed          Journal:  Med Res Arch        ISSN: 2375-1916


  67 in total

1.  Combined analysis of TERT, EGFR, and IDH status defines distinct prognostic glioblastoma classes.

Authors:  Marianne Labussière; Blandine Boisselier; Karima Mokhtari; Anna-Luisa Di Stefano; Anais Rahimian; Marta Rossetto; Pietro Ciccarino; Olivier Saulnier; Rosina Paterra; Yannick Marie; Gaetano Finocchiaro; Marc Sanson
Journal:  Neurology       Date:  2014-08-22       Impact factor: 9.910

Review 2.  The brain tumor microenvironment.

Authors:  Nikki A Charles; Eric C Holland; Richard Gilbertson; Rainer Glass; Helmut Kettenmann
Journal:  Glia       Date:  2011-03-28       Impact factor: 7.452

Review 3.  DNA sequencing at 40: past, present and future.

Authors:  Jay Shendure; Shankar Balasubramanian; George M Church; Walter Gilbert; Jane Rogers; Jeffery A Schloss; Robert H Waterston
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

4.  Glioma stem cells promote radioresistance by preferential activation of the DNA damage response.

Authors:  Shideng Bao; Qiulian Wu; Roger E McLendon; Yueling Hao; Qing Shi; Anita B Hjelmeland; Mark W Dewhirst; Darell D Bigner; Jeremy N Rich
Journal:  Nature       Date:  2006-10-18       Impact factor: 49.962

5.  Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma.

Authors:  Anoop P Patel; Itay Tirosh; John J Trombetta; Alex K Shalek; Shawn M Gillespie; Hiroaki Wakimoto; Daniel P Cahill; Brian V Nahed; William T Curry; Robert L Martuza; David N Louis; Orit Rozenblatt-Rosen; Mario L Suvà; Aviv Regev; Bradley E Bernstein
Journal:  Science       Date:  2014-06-12       Impact factor: 47.728

6.  Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics.

Authors:  Andrea Sottoriva; Inmaculada Spiteri; Sara G M Piccirillo; Anestis Touloumis; V Peter Collins; John C Marioni; Christina Curtis; Colin Watts; Simon Tavaré
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-14       Impact factor: 11.205

7.  Temozolomide chemotherapy alone versus radiotherapy alone for malignant astrocytoma in the elderly: the NOA-08 randomised, phase 3 trial.

Authors:  Wolfgang Wick; Michael Platten; Christoph Meisner; Jörg Felsberg; Ghazaleh Tabatabai; Matthias Simon; Guido Nikkhah; Kirsten Papsdorf; Joachim P Steinbach; Michael Sabel; Stephanie E Combs; Jan Vesper; Christian Braun; Jürgen Meixensberger; Ralf Ketter; Regine Mayer-Steinacker; Guido Reifenberger; Michael Weller
Journal:  Lancet Oncol       Date:  2012-05-10       Impact factor: 41.316

8.  The Immune Landscape of Cancer.

Authors:  Vésteinn Thorsson; David L Gibbs; Scott D Brown; Denise Wolf; Dante S Bortone; Tai-Hsien Ou Yang; Eduard Porta-Pardo; Galen F Gao; Christopher L Plaisier; James A Eddy; Elad Ziv; Aedin C Culhane; Evan O Paull; I K Ashok Sivakumar; Andrew J Gentles; Raunaq Malhotra; Farshad Farshidfar; Antonio Colaprico; Joel S Parker; Lisle E Mose; Nam Sy Vo; Jianfang Liu; Yuexin Liu; Janet Rader; Varsha Dhankani; Sheila M Reynolds; Reanne Bowlby; Andrea Califano; Andrew D Cherniack; Dimitris Anastassiou; Davide Bedognetti; Younes Mokrab; Aaron M Newman; Arvind Rao; Ken Chen; Alexander Krasnitz; Hai Hu; Tathiane M Malta; Houtan Noushmehr; Chandra Sekhar Pedamallu; Susan Bullman; Akinyemi I Ojesina; Andrew Lamb; Wanding Zhou; Hui Shen; Toni K Choueiri; John N Weinstein; Justin Guinney; Joel Saltz; Robert A Holt; Charles S Rabkin; Alexander J Lazar; Jonathan S Serody; Elizabeth G Demicco; Mary L Disis; Benjamin G Vincent; Ilya Shmulevich
Journal:  Immunity       Date:  2018-04-05       Impact factor: 43.474

9.  Tracking tumour evolution in glioma through liquid biopsies of cerebrospinal fluid.

Authors:  Alexandra M Miller; Ronak H Shah; Elena I Pentsova; Maryam Pourmaleki; Samuel Briggs; Natalie Distefano; Youyun Zheng; Anna Skakodub; Smrutiben A Mehta; Carl Campos; Wan-Ying Hsieh; S Duygu Selcuklu; Lilan Ling; Fanli Meng; Xiaohong Jing; Aliaksandra Samoila; Tejus A Bale; Dana W Y Tsui; Christian Grommes; Agnes Viale; Mark M Souweidane; Viviane Tabar; Cameron W Brennan; Anne S Reiner; Marc Rosenblum; Katherine S Panageas; Lisa M DeAngelis; Robert J Young; Michael F Berger; Ingo K Mellinghoff
Journal:  Nature       Date:  2019-01-23       Impact factor: 49.962

Review 10.  Single-cell RNA sequencing technologies and bioinformatics pipelines.

Authors:  Byungjin Hwang; Ji Hyun Lee; Duhee Bang
Journal:  Exp Mol Med       Date:  2018-08-07       Impact factor: 8.718

View more
  4 in total

1.  Brain Tumor Biobank Development for Precision Medicine: Role of the Neurosurgeon.

Authors:  Emilie Darrigues; Benjamin W Elberson; Annick De Loose; Madison P Lee; Ebonye Green; Ashley M Benton; Ladye G Sink; Hayden Scott; Murat Gokden; John D Day; Analiz Rodriguez
Journal:  Front Oncol       Date:  2021-04-26       Impact factor: 6.244

Review 2.  CAR T Cell Therapy for Pediatric Brain Tumors.

Authors:  John D Patterson; Jeffrey C Henson; Rebecca O Breese; Kevin J Bielamowicz; Analiz Rodriguez
Journal:  Front Oncol       Date:  2020-08-12       Impact factor: 6.244

Review 3.  Role of glioblastoma stem cells in cancer therapeutic resistance: a perspective on antineoplastic agents from natural sources and chemical derivatives.

Authors:  Ana Laura V Alves; Izabela N F Gomes; Adriana C Carloni; Marcela N Rosa; Luciane S da Silva; Adriane F Evangelista; Rui Manuel Reis; Viviane Aline O Silva
Journal:  Stem Cell Res Ther       Date:  2021-03-24       Impact factor: 6.832

4.  A novel Cas9-targeted long-read assay for simultaneous detection of IDH1/2 mutations and clinically relevant MGMT methylation in fresh biopsies of diffuse glioma.

Authors:  Thidathip Wongsurawat; Piroon Jenjaroenpun; Annick De Loose; Duah Alkam; David W Ussery; Intawat Nookaew; Yuet-Kin Leung; Shuk-Mei Ho; John D Day; Analiz Rodriguez
Journal:  Acta Neuropathol Commun       Date:  2020-06-20       Impact factor: 7.578

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.