Literature DB >> 32248693

Lead Optimization of a Pyrrole-Based Dihydroorotate Dehydrogenase Inhibitor Series for the Treatment of Malaria.

Sreekanth Kokkonda1, Xiaoyi Deng2, Karen L White3, Farah El Mazouni2, John White1, David M Shackleford3, Kasiram Katneni3, Francis C K Chiu3, Helena Barker3, Jenna McLaren3, Elly Crighton3, Gong Chen3, Inigo Angulo-Barturen4, Maria Belen Jimenez-Diaz4, Santiago Ferrer4, Leticia Huertas-Valentin4, Maria Santos Martinez-Martinez4, Maria Jose Lafuente-Monasterio4, Rajesh Chittimalla5, Shatrughan P Shahi5, Sergio Wittlin6,7, David Waterson8, Jeremy N Burrows8, Dave Matthews8, Diana Tomchick9, Pradipsinh K Rathod1, Michael J Palmer8, Susan A Charman3, Margaret A Phillips2.   

Abstract

Malaria puts at risk nearly half the world's population and causes high mortality in sub-Saharan Africa, while drug resistance threatens current therapies. The pyrimidine biosynthetic enzyme dihydroorotate dehydrogenase (DHODH) is a validated target for malaria treatment based on our finding that triazolopyrimidine DSM265 (1) showed efficacy in clinical studies. Herein, we describe optimization of a pyrrole-based series identified using a target-based DHODH screen. Compounds with nanomolar potency versus Plasmodium DHODH and Plasmodium parasites were identified with good pharmacological properties. X-ray studies showed that the pyrroles bind an alternative enzyme conformation from 1 leading to improved species selectivity versus mammalian enzymes and equivalent activity on Plasmodium falciparum and Plasmodium vivax DHODH. The best lead DSM502 (37) showed in vivo efficacy at similar levels of blood exposure to 1, although metabolic stability was reduced. Overall, the pyrrole-based DHODH inhibitors provide an attractive alternative scaffold for the development of new antimalarial compounds.

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Year:  2020        PMID: 32248693      PMCID: PMC7394244          DOI: 10.1021/acs.jmedchem.0c00311

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  51 in total

1.  A Triazolopyrimidine-Based Dihydroorotate Dehydrogenase Inhibitor with Improved Drug-like Properties for Treatment and Prevention of Malaria.

Authors:  Margaret A Phillips; Karen L White; Sreekanth Kokkonda; Xiaoyi Deng; John White; Farah El Mazouni; Kennan Marsh; Diana R Tomchick; Krishne Manjalanagara; Kakali Rani Rudra; Grennady Wirjanata; Rintis Noviyanti; Ric N Price; Jutta Marfurt; David M Shackleford; Francis C K Chiu; Michael Campbell; Maria Belen Jimenez-Diaz; Santiago Ferrer Bazaga; Iñigo Angulo-Barturen; Maria Santos Martinez; Maria Lafuente-Monasterio; Werner Kaminsky; Kigbafori Silue; Anne-Marie Zeeman; Clemens Kocken; Didier Leroy; Benjamin Blasco; Emilie Rossignol; Thomas Rueckle; Dave Matthews; Jeremy N Burrows; David Waterson; Michael J Palmer; Pradipsinh K Rathod; Susan A Charman
Journal:  ACS Infect Dis       Date:  2016-10-04       Impact factor: 5.084

Review 2.  Malaria.

Authors:  Nicholas J White; Sasithon Pukrittayakamee; Tran Tinh Hien; M Abul Faiz; Olugbenga A Mokuolu; Arjen M Dondorp
Journal:  Lancet       Date:  2013-08-15       Impact factor: 79.321

Review 3.  Drug resistance in Plasmodium.

Authors:  Kasturi Haldar; Souvik Bhattacharjee; Innocent Safeukui
Journal:  Nat Rev Microbiol       Date:  2018-01-22       Impact factor: 60.633

4.  Increased stress associated with head-out plethysmography testing can exacerbate respiratory effects and lead to mortality in rats.

Authors:  James J Lynch; Emilie Rossignol; Joerg J Moehrle; Terry R Van Vleet; Kennan C Marsh; Toufan Parman; Jon Mirsalis; Sean E Ottinger; Jason A Segreti; Mohan Rao; Scott W Mittelstadt
Journal:  J Pharmacol Toxicol Methods       Date:  2019-05-11       Impact factor: 1.950

5.  Specific role of mitochondrial electron transport in blood-stage Plasmodium falciparum.

Authors:  Heather J Painter; Joanne M Morrisey; Michael W Mather; Akhil B Vaidya
Journal:  Nature       Date:  2007-03-01       Impact factor: 49.962

6.  Mechanism-based inactivation of human cytochrome p450 enzymes and the prediction of drug-drug interactions.

Authors:  R Scott Obach; Robert L Walsky; Karthik Venkatakrishnan
Journal:  Drug Metab Dispos       Date:  2006-11-08       Impact factor: 3.922

7.  Structural plasticity of malaria dihydroorotate dehydrogenase allows selective binding of diverse chemical scaffolds.

Authors:  Xiaoyi Deng; Ramesh Gujjar; Farah El Mazouni; Werner Kaminsky; Nicholas A Malmquist; Elizabeth J Goldsmith; Pradipsinh K Rathod; Margaret A Phillips
Journal:  J Biol Chem       Date:  2009-07-28       Impact factor: 5.157

8.  Spiroindolone KAE609 for falciparum and vivax malaria.

Authors:  Nicholas J White; Sasithon Pukrittayakamee; Aung Pyae Phyo; Ronnatrai Rueangweerayut; François Nosten; Podjanee Jittamala; Atthanee Jeeyapant; Jay Prakash Jain; Gilbert Lefèvre; Ruobing Li; Baldur Magnusson; Thierry T Diagana; F Joel Leong
Journal:  N Engl J Med       Date:  2014-07-31       Impact factor: 91.245

Review 9.  Outwitting evolution: fighting drug-resistant TB, malaria, and HIV.

Authors:  Daniel E Goldberg; Robert F Siliciano; William R Jacobs
Journal:  Cell       Date:  2012-03-16       Impact factor: 41.582

10.  Fluorine modulates species selectivity in the triazolopyrimidine class of Plasmodium falciparum dihydroorotate dehydrogenase inhibitors.

Authors:  Xiaoyi Deng; Sreekanth Kokkonda; Farah El Mazouni; John White; Jeremy N Burrows; Werner Kaminsky; Susan A Charman; David Matthews; Pradipsinh K Rathod; Margaret A Phillips
Journal:  J Med Chem       Date:  2014-06-13       Impact factor: 7.446

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  6 in total

1.  Development of a biomarker to monitor target engagement after treatment with dihydroorotate dehydrogenase inhibitors.

Authors:  Michael A Pontikos; Christopher Leija; Zhiyu Zhao; Xiaoyu Wang; Jessica Kilgore; Belen Tornesi; Nicole Adenmatten; Margaret A Phillips; Noelle S Williams
Journal:  Biochem Pharmacol       Date:  2022-08-31       Impact factor: 6.100

2.  Novel Antimalarial Tetrazoles and Amides Active against the Hemoglobin Degradation Pathway in Plasmodium falciparum.

Authors:  Aloysus Lawong; Suraksha Gahalawat; John Okombo; Josefine Striepen; Tomas Yeo; Sachel Mok; Ioanna Deni; Jessica L Bridgford; Hanspeter Niederstrasser; Anwu Zhou; Bruce Posner; Sergio Wittlin; Francisco Javier Gamo; Benigno Crespo; Alisje Churchyard; Jake Baum; Nimisha Mittal; Elizabeth Winzeler; Benoît Laleu; Michael J Palmer; Susan A Charman; David A Fidock; Joseph M Ready; Margaret A Phillips
Journal:  J Med Chem       Date:  2021-02-23       Impact factor: 7.446

3.  Potent Antimalarials with Development Potential Identified by Structure-Guided Computational Optimization of a Pyrrole-Based Dihydroorotate Dehydrogenase Inhibitor Series.

Authors:  Michael J Palmer; Xiaoyi Deng; Shawn Watts; Goran Krilov; Aleksey Gerasyuto; Sreekanth Kokkonda; Farah El Mazouni; John White; Karen L White; Josefine Striepen; Jade Bath; Kyra A Schindler; Tomas Yeo; David M Shackleford; Sachel Mok; Ioanna Deni; Aloysus Lawong; Ann Huang; Gong Chen; Wen Wang; Jaya Jayaseelan; Kasiram Katneni; Rahul Patil; Jessica Saunders; Shatrughan P Shahi; Rajesh Chittimalla; Iñigo Angulo-Barturen; María Belén Jiménez-Díaz; Sergio Wittlin; Patrick K Tumwebaze; Philip J Rosenthal; Roland A Cooper; Anna Caroline Campos Aguiar; Rafael V C Guido; Dhelio B Pereira; Nimisha Mittal; Elizabeth A Winzeler; Diana R Tomchick; Benoît Laleu; Jeremy N Burrows; Pradipsinh K Rathod; David A Fidock; Susan A Charman; Margaret A Phillips
Journal:  J Med Chem       Date:  2021-04-20       Impact factor: 7.446

Review 4.  DHODH and cancer: promising prospects to be explored.

Authors:  Yue Zhou; Lei Tao; Xia Zhou; Zeping Zuo; Jin Gong; Xiaocong Liu; Yang Zhou; Chunqi Liu; Na Sang; Huan Liu; Jiao Zou; Kun Gou; Xiaowei Yang; Yinglan Zhao
Journal:  Cancer Metab       Date:  2021-05-10

5.  On drug discovery against infectious diseases and academic medicinal chemistry contributions.

Authors:  Yves L Janin
Journal:  Beilstein J Org Chem       Date:  2022-09-29       Impact factor: 2.544

Review 6.  Driving antimalarial design through understanding of target mechanism.

Authors:  Petar P S Calic; Mahta Mansouri; Peter J Scammells; Sheena McGowan
Journal:  Biochem Soc Trans       Date:  2020-10-30       Impact factor: 5.407

  6 in total

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