Literature DB >> 32247525

Correction of bias in the estimation of cell volume fraction from histology sections.

Yanxin Liu1, Andrea G Schwartz2, Yuan Hong3, Xiangjun Peng3, Feng Xu4, Stavros Thomopoulos5, Guy M Genin6.   

Abstract

Accurate determination of the fraction of a tissue's volume occupied by cells is critical for studying tissue development, pathology, and biomechanics. For example, homogenization methods that predict the function and responses of tissues based upon the properties of the tissue's constituents require estimates of cell volume fractions. A common way to estimate cellular volume fraction is to image cells in thin, planar histologic sections, and then invoke either the Delesse or the Glagolev principle to estimate the volume fraction from the measured area fraction. The Delesse principle relies upon the observation that for randomly aligned, identical features, the expected value of the observed area fraction of a phase equals the volume fraction of that phase, and the Glagolev principle relies on a similar observation for random rather than planar sampling. These methods are rigorous for analysis of a polished, opaque rock sections and for histologic sections that are thin compared to the characteristic length scale of the cells. However, when histologic slices cannot be cut sufficiently thin, a bias will be introduced. Although this bias - known as the Holmes effect in petrography - has been resolved for opaque spheres in a transparent matrix, it has not been addressed for histologic sections presenting the opposite problem, namely transparent cells in an opaque matrix. In this note, we present a scheme for correcting the bias in volume fraction estimates for transparent components in a relatively opaque matrix.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Histology; Homogenization theory; Quantitative stereology

Mesh:

Year:  2020        PMID: 32247525      PMCID: PMC7594628          DOI: 10.1016/j.jbiomech.2020.109705

Source DB:  PubMed          Journal:  J Biomech        ISSN: 0021-9290            Impact factor:   2.712


  31 in total

1.  Thin bio-artificial tissues in plane stress: the relationship between cell and tissue strain, and an improved constitutive model.

Authors:  J Pablo Marquez; Guy M Genin; George I Zahalak; Elliot L Elson
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

2.  Active self-polarization of contractile cells in asymmetrically shaped domains.

Authors:  A Zemel; S A Safran
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-08-07

3.  Stretch-activated force shedding, force recovery, and cytoskeletal remodeling in contractile fibroblasts.

Authors:  Ali Nekouzadeh; Kenneth M Pryse; Elliot L Elson; Guy M Genin
Journal:  J Biomech       Date:  2008-09-20       Impact factor: 2.712

4.  Remodeling of fibrous extracellular matrices by contractile cells: predictions from discrete fiber network simulations.

Authors:  A S Abhilash; Brendon M Baker; Britta Trappmann; Christopher S Chen; Vivek B Shenoy
Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

5.  Integrin-linked kinase regulates chondrocyte shape and proliferation.

Authors:  Carsten Grashoff; Attila Aszódi; Takao Sakai; Ernst B Hunziker; Reinhard Fässler
Journal:  EMBO Rep       Date:  2003-04       Impact factor: 8.807

6.  Stereological correction procedures for estimating true volume proportions from biased samples.

Authors:  T M Mayhew; L M Cruz
Journal:  J Microsc       Date:  1973-12       Impact factor: 1.758

7.  Correlation of cell body size, axon size, and signal conduction velocity for individually labelled dorsal root ganglion cells in the cat.

Authors:  K H Lee; K Chung; J M Chung; R E Coggeshall
Journal:  J Comp Neurol       Date:  1986-01-15       Impact factor: 3.215

8.  Effective elastic properties of a composite containing multiple types of anisotropic ellipsoidal inclusions, with the application to the attachment of tendon to bone.

Authors:  Fatemeh Saadat; Victor Birman; Stavros Thomopoulos; Guy M Genin
Journal:  J Mech Phys Solids       Date:  2015-09-01       Impact factor: 5.471

9.  Micromechanics and Structural Response of Functionally Graded, Particulate-Matrix, Fiber-Reinforced Composites.

Authors:  Guy M Genin; Victor Birman
Journal:  Int J Solids Struct       Date:  2009-05-15       Impact factor: 3.900

10.  Stress amplification during development of the tendon-to-bone attachment.

Authors:  Yanxin Liu; Andrea G Schwartz; Victor Birman; Stavros Thomopoulos; Guy M Genin
Journal:  Biomech Model Mechanobiol       Date:  2013-12-27
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  1 in total

Review 1.  Enhancing Interrogation of Skeletal Muscle Samples for Informative Quantitative Data.

Authors:  Terence A Partridge
Journal:  J Neuromuscul Dis       Date:  2021
  1 in total

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