| Literature DB >> 32245106 |
Éva S Vanamee1, Denise L Faustman1.
Abstract
Tumor necrosis factor (TNF) superfamily ligands show diverse biological functions, such as the induction of apoptotic cell death or cell survival and proliferation, making them excellent therapeutic targets for cancer and autoimmunity. We review the latest literature on TNF receptor superfamily signaling with a focus on structure-function. Using combinatorics, we argue that receptors that cluster on the cell surface and are activated by membrane-bound ligands need to arrange in a highly ordered manner, as the probability of random ligand and receptor arrangements matching up for receptor activation is very low. A growing body of evidence indicates that antiparallel receptor dimers that sequester the ligand binding site cluster on the cell surface, forming a hexagonal lattice. Upon ligand binding, this arrangement puts the activated receptors at the right distance to accommodate the downstream signaling partners. The data also suggest that the same geometry is utilized regardless of receptor type. The unified model provides important clues about TNF receptor signaling and should aid the design of better therapies for cancer and various immune mediated diseases.Entities:
Keywords: TNFSF signaling; TRAIL; TRAIL receptors; antiparallel dimer; apoptosis; cancer; hexagonal lattice; receptor clustering
Mesh:
Substances:
Year: 2020 PMID: 32245106 PMCID: PMC7140660 DOI: 10.3390/cells9030764
Source DB: PubMed Journal: Cells ISSN: 2073-4409 Impact factor: 6.600
Tumor necrosis factor receptor superfamily (TNFRSF) members, their ligands, and intracellular binding partners.
| TNFRSF Receptor | Number | Intracellular Binding | TNFSF Ligand |
|---|---|---|---|
| Death receptors | |||
| TNFR1 (1a, CD120a) | 4 | TRADD, FADD, RIP | TNF (2, TNF-α), LTα (1, TNF-β), LTβ (3) |
| Fas (6, CD95) | 3 | FADD | FasL (6, CD178) |
| TRAILR1 (10A, DR4, CD261) | 3¶ | FADD, TRADD, RIP | TRAIL/Apo2L (10, CD253) |
| TRAILR2 (10B, DR5, CD262) | 3¶ | FADD, TRADD, RIP | TRAIL/Apo2L (10, CD253) |
| NGFR (16, p75NTR, CD271) | 4 | NADE | NGF (not a TNFSF member) |
| DR3 (25 or 12, TRAMP) | 4¶ | TRADD, FADD | TL1A (15, VEGI), TWEAK (12) |
| DR6 (21, CD358) | 4 | TRADD, RIP | N-APP (not a TNFSF member) |
| EDAR | 3¶ | EDARADD | EDA-A1 |
| Receptors with TRAF-interacting motif | |||
| TNFR2 (1b, CD120b) | 4 | TRAF1-3 | TNF (2, TNF-α), LTα (1, TNF-β) |
| LTβR (3) | 4 | TRAF2-4, TRAF5 | LTα (1, TNF-β), LTβ (3) as LTαβ2, LTα2β |
| OX40 (4, CD134) | 4¶ | TRAF1-3, TRAF5, TRAF6 | OX40L (4, CD252) |
| CD40 (5) | 4 | TRAF1-3, TRAF5, TRAF6 | CD40L (5, CD154) |
| CD27 (7) | 3 | TRAF2, TRAF3, TRAF5 | CD27L (7, CD70) |
| CD30 (8) | 6 | TRAF1-3, TRAF5 | CD30L (8, CD153) |
| 4-1BB (9, CD137) | 4 | TRAF1-3 | 4-1BBL (9, CD137L) |
| RANK (11A, CD265) | 4 | TRAF1-3, TRAF5, TRAF6 | RANKL (11, TRANCE, CD254) |
| Fn14 (12A, TWEAKR; CD266) | 1 | TRAF2, TRAF6 | TWEAK (12) |
| TACI (13B, CD267) | 2 | TRAF2-3, TRAF5, TRAF6 | APRIL (13, CD256) |
| BAFFR (13C, BR3, CD268) | 1 | TRAF2, TRAF3, TRAF6 | BAFF (13B/20, BLys, THANK, CD257) |
| HVEM (14, CD270) | 3 | TRAF1-3, TRAF5 | LIGHT (14, CD258), LT-α (1, TNF-β) |
| BCMA (17, CD269) | 1 | TRAF1-3, TRAF5, TRAF6 | APRIL (13, CD256), BAFF (13B/20, BLys, THANK, CD257) |
| GITR (18, AITR, CD357) | 3 | TRAF1-3 | GITRL (18, AITRL, TL6) |
| TROY (19, TAJ) | 3¶ | TRAF1-3, TRAF5 | ? |
| RELT (19L) | 1 | TRAF1 | Not known |
| XEDAR (27) | 3¶ | TRAF1, TRAF3, TRAF6 | EDA-A2 |
| Decoy receptors | n/a | ||
| TRAILR3 (10C, DcR1, CD263) | 3¶ | TRAIL/Apo2L (10, CD253) | |
| TRAILR4 (10D, DcR2, CD264) | 3¶ | TRAIL/Apo2L (10, CD253) | |
| OPG (11B) | 4 | TRAIL/Apo2L (10, CD253), RANKL (11, TRANCE, CD254) | |
| DcR3 (6B) | 4 | FasL (6), TL1A (15, VEGI), LIGHT (14, CD258) |
‡: Uniprot (uniport.org) assignments were used to determine the number of cysteine-rich domains (CRD); ¶: Contains truncated CRD domains.
Figure 1Representative arrangements of receptors on the cell surface. (a) An example of a random arrangement of 10 receptor trimers limited to lattice points of a 10 × 10 matrix, top view. Even with this constraint there are more than 17 trillion possible combinations (C(100,10)), more than 4 trillion of them unique. To activate these receptors with their corresponding membrane-bound ligands, the ligands would have to be arranged exactly the same way to simultaneously activate the receptors. The probability of that is less than 1 in 4 trillion. (b) Random arrangement of pairs of receptor trimers. Having 10 receptors arranged in pairs of trimers on the cell surface lowers the number of unique receptor arrangements to over 38 million and the probability that one of these arrangements will match up with corresponding random ligands is still very low. (c) Tight hexagonal lattice with parallel dimer arrangements of TNF receptor 1 (TNFR1) [Protein Data Bank (PDB) ID:1NCF] top view, and side view of a single dimer. The N and C terminal are labeled. (d) Hexagonal lattice with antiparallel receptor dimers of TNFR1 (PDB ID: 1NCF) top view, and side view of a single antiparallel dimer. Five times as many receptors can be fit into the same area in the tight hexagonal cluster in (c) compared to the larger hexagonal lattice occupied by the antiparallel receptor dimers. The red circles in (c) and (d) illustrate the trimerization interface. The molecular representations were created by the molecular graphics program PyMOL [17].
Figure 2TRAIL-R2 activation and formation of the death inducing signaling complex (DISC). The TRAIL-TRAIL-R2 complex structure (PDB ID: 1DU3) is shown in cartoon representation (top left). The TRAIL ligand trimer (pink) surrounded by three TRAIL-R2 receptors (blue). These complexes can cluster on the cell surface in a hexagonal lattice (top middle) that are stabilized by agonist antibodies shown in yellow (top right). Below two TRAIL-TRAIl-R2 complexes are illustrated in side view. The three cysteine-rich domains (CRD1-3) of TRAIL-R2 are labelled in the left complex. The transmembrane domain of TRAIL-R2 is also shown (PDB ID: 6NHY). A model of the DISC complex is illustrated below the cell membrane in spheres representation. The partial model of the TRAIL death domain (TRAIL-DD) dimer is shown in dark and light blue, the Fas associated domain (FADD) dimer is shown in dark and lighter green, and the Caspase 8 death effector domain (DED) dimer is shown in red and orange. On the right a model of how the DISC may arrange in a hexagonal lattice is illustrated in top view.
Figure 3Regulation of herpes virus entry mediator (HVEM) signaling by B- and T lymphocyte attenuator (BTLA). The structure of the HVEM-BTLA cis complex (based on PDB ID: 2AW2) is shown in side view in cartoon representation (top left). The HVEM monomers are shown in blue and monomers of the BTLA dimer in yellow and orange respectively. BTLA aids the oligomerization of HVEM. The complexes may arrange in a hexagonal lattice shown on the right in surface representation (top view). Trimeric LIGHT binding to HVEM activates the receptors to form the LIGHT-HVEM complexes shown in cartoon representation (PDB ID: 4RSU). LIGHT is shown in magenta and HVEM in blue. The CRD1-3 are labelled in the left complex. The receptor ligand complexes may also cluster to form a hexagonal lattice shown on the right in top view. The HVEM-LIGHT complexes are bound to TNF related associated factor (TRAF) in the cytosol shown in chartreuse. TRAF trimerization is initiated by LIGHT binding and HVEM activation. This then leads to the dimerization of the TRAF-N domain shown in cyan. The TRAF complexes also form a hexagonal lattice shown on the right in surface representation. The TRAF complex was modeled from several structures as described earlier [14].