Literature DB >> 32244231

The physical basis and practical consequences of biological promiscuity.

Shelley D Copley1.   

Abstract

Proteins interact with metabolites, nucleic acids, and other proteins to orchestrate the myriad catalytic, structural and regulatory functions that support life from the simplest microbes to the most complex multicellular organisms. These molecular interactions are often exquisitely specific, but never perfectly so. Adventitious "promiscuous" interactions are ubiquitous due to the thousands of macromolecules and small molecules crowded together in cells. Such interactions may perturb protein function at the molecular level, but as long as they do not compromise organismal fitness, they will not be removed by natural selection. Although promiscuous interactions are physiologically irrelevant, they are important because they can provide a vast reservoir of potential functions that can provide the starting point for evolution of new functions, both in nature and in the laboratory.
© 2020 IOP Publishing Ltd.

Entities:  

Keywords:  enzyme evolution; evolution; moonlighting; promiscuity; protein dynamics; protein-protein interaction

Year:  2020        PMID: 32244231      PMCID: PMC9291633          DOI: 10.1088/1478-3975/ab8697

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.959


  182 in total

Review 1.  The protein kinase complement of the human genome.

Authors:  G Manning; D B Whyte; R Martinez; T Hunter; S Sudarsanam
Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

Review 2.  The TetR family of regulators.

Authors:  Leslie Cuthbertson; Justin R Nodwell
Journal:  Microbiol Mol Biol Rev       Date:  2013-09       Impact factor: 11.056

Review 3.  Competition among metal ions for protein binding sites: determinants of metal ion selectivity in proteins.

Authors:  Todor Dudev; Carmay Lim
Journal:  Chem Rev       Date:  2013-09-16       Impact factor: 60.622

4.  Engineering Saccharomyces cerevisiae for production of simvastatin.

Authors:  Carly M Bond; Yi Tang
Journal:  Metab Eng       Date:  2018-09-10       Impact factor: 9.783

5.  Efficient synthesis of simvastatin by use of whole-cell biocatalysis.

Authors:  Xinkai Xie; Yi Tang
Journal:  Appl Environ Microbiol       Date:  2007-02-02       Impact factor: 4.792

6.  On earlier states of the biochemical system.

Authors:  M Ycas
Journal:  J Theor Biol       Date:  1974-03       Impact factor: 2.691

7.  Mechanism of aldolase control of sorting nexin 9 function in endocytosis.

Authors:  Erumbi S Rangarajan; HaJeung Park; Emanuelle Fortin; Jurgen Sygusch; Tina Izard
Journal:  J Biol Chem       Date:  2010-02-02       Impact factor: 5.157

8.  Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm.

Authors:  Sean R McGuffee; Adrian H Elcock
Journal:  PLoS Comput Biol       Date:  2010-03-05       Impact factor: 4.475

9.  A conserved phosphatase destroys toxic glycolytic side products in mammals and yeast.

Authors:  François Collard; Francesca Baldin; Isabelle Gerin; Jennifer Bolsée; Gaëtane Noël; Julie Graff; Maria Veiga-da-Cunha; Vincent Stroobant; Didier Vertommen; Amina Houddane; Mark H Rider; Carole L Linster; Emile Van Schaftingen; Guido T Bommer
Journal:  Nat Chem Biol       Date:  2016-06-13       Impact factor: 15.040

10.  Higher-order epistasis shapes the fitness landscape of a xenobiotic-degrading enzyme.

Authors:  Gloria Yang; Dave W Anderson; Florian Baier; Elias Dohmen; Nansook Hong; Paul D Carr; Shina Caroline Lynn Kamerlin; Colin J Jackson; Erich Bornberg-Bauer; Nobuhiko Tokuriki
Journal:  Nat Chem Biol       Date:  2019-10-21       Impact factor: 15.040

View more
  2 in total

Review 1.  A mechanistic view of enzyme evolution.

Authors:  Gloria Yang; Charlotte M Miton; Nobuhiko Tokuriki
Journal:  Protein Sci       Date:  2020-08       Impact factor: 6.725

Review 2.  Underground metabolism facilitates the evolution of novel pathways for vitamin B6 biosynthesis.

Authors:  Björn Richts; Fabian M Commichau
Journal:  Appl Microbiol Biotechnol       Date:  2021-03-04       Impact factor: 4.813

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.