Literature DB >> 32238909

A comparison of genomic diagnostics in adults and children with epilepsy and comorbid intellectual disability.

Norman Delanty1,2,3, Gianpiero L Cavalleri4,5, Katherine A Benson1,2, Maire White1, Nicholas M Allen6, Susan Byrne1,2,7, Robert Carton1,2, Elizabeth Comerford1, Daniel Costello8, Colin Doherty9, Brendan Dunleavey10, Hany El-Naggar1,2,3, Nisha Gangadharan1,2, Sinéad Heavin1, Hugh Kearney1,2,3, Nicholas J Lench11, John Lynch12, Mark McCormack1, Mary O' Regan7, Karl Podesta13, Kevin Power1,2, Anthony S Rogers11, Charles A Steward11, Brian Sweeney8, David Webb7, Mary Fitzsimons1,2, Marie Greally1.   

Abstract

Next generation sequencing provides an important opportunity for improved diagnosis in epilepsy. To date, the majority of diagnostic genetic testing is conducted in the paediatric arena, while the utility of such testing is less well understood in adults with epilepsy. We conducted whole exome sequencing (WES) and copy number variant analyses in an Irish cohort of 101 people with epilepsy and co-morbid intellectual disability to compare the diagnostic yield of genomic testing between adult and paediatric patients. Variant interpretation followed American College of Medical Genetics and Genomics (ACMG) guidelines. We demonstrate that WES, in combination with array-comparative genomic hybridisation, provides a diagnostic rate of 27% in unrelated adult epilepsy patients and 42% in unrelated paediatric patients. We observe a 2.7% rate of ACMG-defined incidental findings. Our findings indicate that WES has similar utility in both adult and paediatric cohorts and is appropriate for diagnostic testing in both epilepsy patient groups.

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Year:  2020        PMID: 32238909      PMCID: PMC7381648          DOI: 10.1038/s41431-020-0610-3

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  44 in total

1.  Diagnostic odyssey in severe neurodevelopmental disorders: toward clinical whole-exome sequencing as a first-line diagnostic test.

Authors:  J Thevenon; Y Duffourd; A Masurel-Paulet; M Lefebvre; F Feillet; S El Chehadeh-Djebbar; J St-Onge; A Steinmetz; F Huet; M Chouchane; V Darmency-Stamboul; P Callier; C Thauvin-Robinet; L Faivre; J B Rivière
Journal:  Clin Genet       Date:  2016-04-26       Impact factor: 4.438

Review 2.  From global campaign to global commitment: The World Health Assembly's Resolution on epilepsy.

Authors:  Athanasios Covanis; Alla Guekht; Shichuo Li; Mary Secco; Raad Shakir; Emilio Perucca
Journal:  Epilepsia       Date:  2015-09-22       Impact factor: 5.864

3.  Diagnostic exome sequencing in 100 consecutive patients with both epilepsy and intellectual disability.

Authors:  Francesca M Snoeijen-Schouwenaars; Jans S van Ool; Judith S Verhoeven; Petra van Mierlo; Hilde M H Braakman; Eric E Smeets; Joost Nicolai; Jeroen Schoots; Mariel W A Teunissen; Rob P W Rouhl; In Y Tan; Helger G Yntema; Han G Brunner; Rolph Pfundt; Alexander P Stegmann; Erik-Jan Kamsteeg; Helenius J Schelhaas; Marjolein H Willemsen
Journal:  Epilepsia       Date:  2018-12-07       Impact factor: 5.864

4.  Unexplained early onset epileptic encephalopathy: Exome screening and phenotype expansion.

Authors:  Nicholas M Allen; Judith Conroy; Amre Shahwan; Bryan Lynch; Raony G Correa; Sergio D J Pena; Dara McCreary; Tiago R Magalhães; Sean Ennis; Sally A Lynch; Mary D King
Journal:  Epilepsia       Date:  2015-12-09       Impact factor: 5.864

5.  High Rate of Recurrent De Novo Mutations in Developmental and Epileptic Encephalopathies.

Authors:  Fadi F Hamdan; Candace T Myers; Patrick Cossette; Philippe Lemay; Dan Spiegelman; Alexandre Dionne Laporte; Christina Nassif; Ousmane Diallo; Jean Monlong; Maxime Cadieux-Dion; Sylvia Dobrzeniecka; Caroline Meloche; Kyle Retterer; Megan T Cho; Jill A Rosenfeld; Weimin Bi; Christine Massicotte; Marguerite Miguet; Ledia Brunga; Brigid M Regan; Kelly Mo; Cory Tam; Amy Schneider; Georgie Hollingsworth; David R FitzPatrick; Alan Donaldson; Natalie Canham; Edward Blair; Bronwyn Kerr; Andrew E Fry; Rhys H Thomas; Joss Shelagh; Jane A Hurst; Helen Brittain; Moira Blyth; Robert Roger Lebel; Erica H Gerkes; Laura Davis-Keppen; Quinn Stein; Wendy K Chung; Sara J Dorison; Paul J Benke; Emily Fassi; Nicole Corsten-Janssen; Erik-Jan Kamsteeg; Frederic T Mau-Them; Ange-Line Bruel; Alain Verloes; Katrin Õunap; Monica H Wojcik; Dara V F Albert; Sunita Venkateswaran; Tyson Ware; Dean Jones; Yu-Chi Liu; Shekeeb S Mohammad; Peyman Bizargity; Carlos A Bacino; Vincenzo Leuzzi; Simone Martinelli; Bruno Dallapiccola; Marco Tartaglia; Lubov Blumkin; Klaas J Wierenga; Gabriela Purcarin; James J O'Byrne; Sylvia Stockler; Anna Lehman; Boris Keren; Marie-Christine Nougues; Cyril Mignot; Stéphane Auvin; Caroline Nava; Susan M Hiatt; Martina Bebin; Yunru Shao; Fernando Scaglia; Seema R Lalani; Richard E Frye; Imad T Jarjour; Stéphanie Jacques; Renee-Myriam Boucher; Emilie Riou; Myriam Srour; Lionel Carmant; Anne Lortie; Philippe Major; Paola Diadori; François Dubeau; Guy D'Anjou; Guillaume Bourque; Samuel F Berkovic; Lynette G Sadleir; Philippe M Campeau; Zoha Kibar; Ronald G Lafrenière; Simon L Girard; Saadet Mercimek-Mahmutoglu; Cyrus Boelman; Guy A Rouleau; Ingrid E Scheffer; Heather C Mefford; Danielle M Andrade; Elsa Rossignol; Berge A Minassian; Jacques L Michaud
Journal:  Am J Hum Genet       Date:  2017-11-02       Impact factor: 11.025

6.  Genetic diagnosis of developmental disorders in the DDD study: a scalable analysis of genome-wide research data.

Authors:  Caroline F Wright; Tomas W Fitzgerald; Wendy D Jones; Stephen Clayton; Jeremy F McRae; Margriet van Kogelenberg; Daniel A King; Kirsty Ambridge; Daniel M Barrett; Tanya Bayzetinova; A Paul Bevan; Eugene Bragin; Eleni A Chatzimichali; Susan Gribble; Philip Jones; Netravathi Krishnappa; Laura E Mason; Ray Miller; Katherine I Morley; Vijaya Parthiban; Elena Prigmore; Diana Rajan; Alejandro Sifrim; G Jawahar Swaminathan; Adrian R Tivey; Anna Middleton; Michael Parker; Nigel P Carter; Jeffrey C Barrett; Matthew E Hurles; David R FitzPatrick; Helen V Firth
Journal:  Lancet       Date:  2014-12-17       Impact factor: 79.321

7.  Analysis of exome data for 4293 trios suggests GPI-anchor biogenesis defects are a rare cause of developmental disorders.

Authors:  Alistair T Pagnamenta; Yoshiko Murakami; John M Taylor; Consuelo Anzilotti; Malcolm F Howard; Venessa Miller; Diana S Johnson; Shereen Tadros; Sahar Mansour; I Karen Temple; Rachel Firth; Elisabeth Rosser; Rachel E Harrison; Bronwen Kerr; Niko Popitsch; Taroh Kinoshita; Jenny C Taylor; Usha Kini
Journal:  Eur J Hum Genet       Date:  2017-03-22       Impact factor: 4.246

8.  De novo mutations in epileptic encephalopathies.

Authors:  Andrew S Allen; Samuel F Berkovic; Patrick Cossette; Norman Delanty; Dennis Dlugos; Evan E Eichler; Michael P Epstein; Tracy Glauser; David B Goldstein; Yujun Han; Erin L Heinzen; Yuki Hitomi; Katherine B Howell; Michael R Johnson; Ruben Kuzniecky; Daniel H Lowenstein; Yi-Fan Lu; Maura R Z Madou; Anthony G Marson; Heather C Mefford; Sahar Esmaeeli Nieh; Terence J O'Brien; Ruth Ottman; Slavé Petrovski; Annapurna Poduri; Elizabeth K Ruzzo; Ingrid E Scheffer; Elliott H Sherr; Christopher J Yuskaitis; Bassel Abou-Khalil; Brian K Alldredge; Jocelyn F Bautista; Samuel F Berkovic; Alex Boro; Gregory D Cascino; Damian Consalvo; Patricia Crumrine; Orrin Devinsky; Dennis Dlugos; Michael P Epstein; Miguel Fiol; Nathan B Fountain; Jacqueline French; Daniel Friedman; Eric B Geller; Tracy Glauser; Simon Glynn; Sheryl R Haut; Jean Hayward; Sandra L Helmers; Sucheta Joshi; Andres Kanner; Heidi E Kirsch; Robert C Knowlton; Eric H Kossoff; Rachel Kuperman; Ruben Kuzniecky; Daniel H Lowenstein; Shannon M McGuire; Paul V Motika; Edward J Novotny; Ruth Ottman; Juliann M Paolicchi; Jack M Parent; Kristen Park; Annapurna Poduri; Ingrid E Scheffer; Renée A Shellhaas; Elliott H Sherr; Jerry J Shih; Rani Singh; Joseph Sirven; Michael C Smith; Joseph Sullivan; Liu Lin Thio; Anu Venkat; Eileen P G Vining; Gretchen K Von Allmen; Judith L Weisenberg; Peter Widdess-Walsh; Melodie R Winawer
Journal:  Nature       Date:  2013-08-11       Impact factor: 49.962

9.  Molecular diagnosis of patients with epilepsy and developmental delay using a customized panel of epilepsy genes.

Authors:  Laura Ortega-Moreno; Beatriz G Giráldez; Victor Soto-Insuga; Rebeca Losada-Del Pozo; María Rodrigo-Moreno; Cristina Alarcón-Morcillo; Gema Sánchez-Martín; Esther Díaz-Gómez; Rosa Guerrero-López; José M Serratosa
Journal:  PLoS One       Date:  2017-11-30       Impact factor: 3.240

10.  Diagnostic exome sequencing provides a molecular diagnosis for a significant proportion of patients with epilepsy.

Authors:  Katherine L Helbig; Kelly D Farwell Hagman; Deepali N Shinde; Cameron Mroske; Zöe Powis; Shuwei Li; Sha Tang; Ingo Helbig
Journal:  Genet Med       Date:  2016-01-21       Impact factor: 8.822

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  10 in total

1.  The association between early childhood onset epilepsy and attention-deficit hyperactivity disorder (ADHD) in 3237 children and adolescents with Autism Spectrum Disorder (ASD): a historical longitudinal cohort data linkage study.

Authors:  Vibhore Prasad; Johnny Downs; Lauren Carson; Valeria Parlatini; Tara Safa; Benjamin Baig; Hitesh Shetty; Jacqueline Phillips-Owen
Journal:  Eur Child Adolesc Psychiatry       Date:  2022-08-04       Impact factor: 5.349

Review 2.  Diagnostic Considerations in the Epilepsies-Testing Strategies, Test Type Advantages, and Limitations.

Authors:  Wei-Liang Chen; Heather C Mefford
Journal:  Neurotherapeutics       Date:  2021-09-16       Impact factor: 6.088

3.  KBG syndrome mimicking genetic generalized epilepsy.

Authors:  M J Murphy; N McSweeney; G L Cavalleri; M T Greally; K A Benson; D J Costello
Journal:  Epilepsy Behav Rep       Date:  2022-04-20

4.  Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability.

Authors:  Alejandro J Brea-Fernández; Miriam Álvarez-Barona; Jorge Amigo; María Tubío-Fungueiriño; Pilar Caamaño; Montserrat Fernández-Prieto; Francisco Barros; Silvia De Rubeis; Joseph Buxbaum; Ángel Carracedo
Journal:  Eur J Hum Genet       Date:  2022-03-23       Impact factor: 5.351

Review 5.  Epilepsy Genetics and Precision Medicine in Adults: A New Landscape for Developmental and Epileptic Encephalopathies.

Authors:  Álvaro Beltrán-Corbellini; Ángel Aledo-Serrano; Rikke S Møller; Eduardo Pérez-Palma; Irene García-Morales; Rafael Toledano; Antonio Gil-Nagel
Journal:  Front Neurol       Date:  2022-02-17       Impact factor: 4.003

6.  De novo DYNC1H1 mutation causes infantile developmental and epileptic encephalopathy with brain malformations.

Authors:  Tangfeng Su; Yu Yan; Qingqing Hu; Yan Liu; Sanqing Xu
Journal:  Mol Genet Genomic Med       Date:  2022-01-31       Impact factor: 2.183

7.  Diagnostic yield of patients with undiagnosed intellectual disability, global developmental delay and multiples congenital anomalies using karyotype, microarray analysis, whole exome sequencing from Central Brazil.

Authors:  Ana Julia da Cunha Leite; Irene Plaza Pinto; Nico Leijsten; Martina Ruiterkamp-Versteeg; Rolph Pfundt; Nicole de Leeuw; Aparecido Divino da Cruz; Lysa Bernardes Minasi
Journal:  PLoS One       Date:  2022-04-07       Impact factor: 3.240

8.  Next-generation gene panel testing in adolescents and adults in a medical neuropsychiatric genetics clinic.

Authors:  Y Trakadis; A Accogli; B Qi; D Bloom; R Joober; E Levy; K Tabbane
Journal:  Neurogenetics       Date:  2021-08-07       Impact factor: 2.660

9.  Community-based recruitment and exome sequencing indicates high diagnostic yield in adults with intellectual disability.

Authors:  Aniko Sabo; David Murdock; Shannon Dugan; Qingchang Meng; Marie-Claude Gingras; Jianhong Hu; Donna Muzny; Richard Gibbs
Journal:  Mol Genet Genomic Med       Date:  2020-08-07       Impact factor: 2.183

10.  The genetic landscape of intellectual disability and epilepsy in adults and the elderly: a systematic genetic work-up of 150 individuals.

Authors:  Pia Zacher; Thomas Mayer; Frank Brandhoff; Tobias Bartolomaeus; Diana Le Duc; Martin Finzel; Anja Heinze; Susanne Horn; Chiara Klöckner; Gudrun Körber; Julia Hentschel; Malgorzata Kalita; Ilona Krey; Marina Nastainczyk-Wulf; Konrad Platzer; Johannes Rebstock; Bernt Popp; Mathias Stiller; Anne-Christin Teichmann; Rami Abou Jamra; Johannes R Lemke
Journal:  Genet Med       Date:  2021-04-28       Impact factor: 8.822

  10 in total

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