| Literature DB >> 32235781 |
Omar Graciano-Machuca1,2, Anabell Alvarado-Navarro3, María Guadalupe Ramírez-Dueñas4, Delfina Guadalupe Villanueva-Quintero5,6, Erandi Enif Velarde-de la Cruz1, Andrea Carolina Machado-Sulbarán1, Margarita Montoya-Buelna4, Pedro Ernesto Sánchez-Hernández4.
Abstract
NK and some T cell functions are regulated by the interaction between KIR and HLA molecules. Several studies have shown an association between activating KIR genes and the development of autoimmune diseases, including psoriasis vulgaris (PsV). Our objective was to determine the association between KIR/HLA genes and genotypes with PsV in the Western mestizo Mexican population. One hundred subjects diagnosed with PsV (SP) and 108 healthy subjects (HS) were genotyped for 14 KIR genes, HLA-Bw4, HLA-C1, and HLA-C2 by PCR-single specific primer (SSP). Positive associations of the KIR3DS1 gene (odds ratio (OR) 1.959, p = 0.021), G11 genotype (OR 19.940, p = 0.008), and KIR3DS1/HLA-ABw4 (OR 2.265, p = 0.009) were found with susceptibility to PsV. In contrast, the G1 genotype (OR 0.448, p = 0.031) and KIR3DL1/HLA-Bw4Ile80 (OR 0.522, p = 0.022) were negatively associated with susceptibility to this disease. These results suggest an implication of the KIR3DS1/HLA-ABw4 genotype in PsV pathology.Entities:
Keywords: HLA; HLA-Bw4; KIR; KIR3DS1; psoriasis vulgaris
Mesh:
Substances:
Year: 2020 PMID: 32235781 PMCID: PMC7141133 DOI: 10.3390/genes11030338
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Distribution of KIR and HLA genes in healthy subjects and subjects with psoriasis vulgaris.
| Gene | HS | SP | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
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| %CF | GF |
| %CF | GF |
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| 95% CI |
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| 108 | 100.0 | 1.00 | 99 | 99.0 | 0.90 | NS | |||
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| 59 | 54.6 | 0.33 | 61 | 61.0 | 0.38 | NS | |||
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| 107 | 99.1 | 0.90 | 96 | 96.0 | 0.80 | NS | |||
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| 101 | 93.5 | 0.75 | 92 | 92.0 | 0.72 | NS | |||
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| 106 | 98.1 | 0.86 | 99 | 99.0 | 0.90 | NS | |||
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| 52 | 48.1 | 0.28 | 52 | 52.0 | 0.31 | NS | |||
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| 51 | 47.2 | 0.27 | 55 | 55.0 | 0.33 | NS | |||
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| 24 | 22.2 | 0.12 | 21 | 21.0 | 0.11 | NS | |||
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| 101 | 93.5 | 0.75 | 92 | 92.0 | 0.72 | NS | |||
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| 47 | 43.5 | 0.25 | 47 | 47.0 | 0.27 | NS | |||
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| 0.33 |
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| 0.46 |
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| 107 | 99.1 | 0.90 | 99 | 99.0 | 0.90 | NS | |||
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| 108 | 100.0 | 1.00 | 100 | 100.0 | 1.00 | NS | |||
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| 108 | 100.0 | 1.00 | 100 | 100.0 | 1.00 | NS | |||
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| 63 | 58.3 | 0.35 | 62 | 62.0 | 0.38 | NS | |||
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| 108 | 100.0 | 1.00 | 100 | 100.0 | 1.00 | NS | |||
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| 107 | 99.1 | 0.90 | 98 | 98.0 | 0.86 | NS | |||
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| 100 | 92.6 | 0.73 | 90 | 90.9 | 0.70 | NS | |||
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| 36.1 | 0.20 | 50 |
| 0.29 | 0.044 | 1.769 |
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| 69.4 | 0.45 | 54 |
| 0.32 | 0.023 | 0.517 |
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| 62 | 57.4 | 0.35 | 43 | 43.0 | 0.25 | NS | |||
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| 98 | 90.7 | 0.70 | 90 | 90.0 | 0.68 | NS | |||
HS: Healthy Subjects; SP: Subjects with Psoriasis vulgaris; KIR: Killer Immunoglobulin-like Receptor; HLA: Human Leukocyte Antigen; CF: Carrier Frequency; GF: Gene Frequency; OR: Odds Ratio; CI: Confidence Interval; NS: Not Significant; p based on X2 test and adjusted p’ based on Holm-Bonferroni correction for multiple comparisons. Significant differences between groups are in bold. * At least one positive HLA-Bw4 reaction.
KIR genotype profile of healthy subjects and subjects with psoriasis vulgaris.
| GENOTYPE |
| HS | SP | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | ID | AA and Bx gene-content genotypes |
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| G2 | 2 | Bx | 12 | 9 | ||||||||||||||||
| G3 | 3 | Bx | 13 | 14 | ||||||||||||||||
| G4 | 4 | Bx | 6 | 4 | ||||||||||||||||
| G5 | 5 | Bx | 4 | 2 | ||||||||||||||||
| G6 | 6 | Bx | 2 | 5 | ||||||||||||||||
| G7 | 7 | Bx | 3 | 4 | ||||||||||||||||
| G8 | 8 | Bx | 1 | 0 | ||||||||||||||||
| G9 | 9 | Bx | 1 | 1 | ||||||||||||||||
| G10 | 13 | Bx | 2 | 2 | ||||||||||||||||
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| G12 | 15 | Bx | 1 | 1 | ||||||||||||||||
| G13 | 18 | Bx | 3 | 0 | ||||||||||||||||
| G14 | 19 | Bx | 2 | 0 | ||||||||||||||||
| G15 | 20 | Bx | 0 | 1 | ||||||||||||||||
| G16 | 22 | Bx | 1 | 1 | ||||||||||||||||
| G17 | 27 | Bx | 1 | 0 | ||||||||||||||||
| G18 | 28 | Bx | 1 | 0 | ||||||||||||||||
| G19 | 29 | Bx | 0 | 1 | ||||||||||||||||
| G20 | 31 | Bx | 3 | 1 | ||||||||||||||||
| G21 | 33 | Bx | 1 | 0 | ||||||||||||||||
| G22 | 38 | Bx | 1 | 1 | ||||||||||||||||
| G23 | 44 | Bx | 2 | 0 | ||||||||||||||||
| G24 | 49 | Bx | 0 | 1 | ||||||||||||||||
| G25 | 56 | Bx | 1 | 1 | ||||||||||||||||
| G26 | 58 | Bx | 0 | 1 | ||||||||||||||||
| G27 | 69 | Bx | 2 | 1 | ||||||||||||||||
| G28 | 70 | Bx | 1 | 2 | ||||||||||||||||
| G29 | 75 | Bx | 0 | 1 | ||||||||||||||||
| G30 | 80 | Bx | 0 | 3 | ||||||||||||||||
| G31 | 86 | Bx | 0 | 1 | ||||||||||||||||
| G32 | 87 | Bx | 1 | 1 | ||||||||||||||||
| G33 | 93 | Bx | 1 | 0 | ||||||||||||||||
| G34 | 94 | Bx | 0 | 1 | ||||||||||||||||
| G35 | 136 | Bx | 0 | 1 | ||||||||||||||||
| G36 | 137 | Bx | 0 | 1 | ||||||||||||||||
| G37 | 167 | Bx | 1 | 0 | ||||||||||||||||
| G38 | 180 | AA | 0 | 1 | ||||||||||||||||
| G39 | 184 | Bx | 1 | 0 | ||||||||||||||||
| G40 | 188 | Bx | 1 | 3 | ||||||||||||||||
| G41 | 191 | Bx | 1 | 0 | ||||||||||||||||
| G42 | 200 | Bx | 0 | 1 | ||||||||||||||||
| G43 | 240 | Bx | 0 | 1 | ||||||||||||||||
| G44 | 260 | Bx | 1 | 0 | ||||||||||||||||
| G45 | 266 | Bx | 1 | 0 | ||||||||||||||||
| G46 | 299 | Bx | 1 | 0 | ||||||||||||||||
| G47 | 319 | Bx | 0 | 1 | ||||||||||||||||
| G48 | 328 | Bx | 2 | 1 | ||||||||||||||||
| G49 | 336 | Bx | 0 | 1 | ||||||||||||||||
| G50 | 381 | Bx | 0 | 1 | ||||||||||||||||
| G51 | 383 | Bx | 0 | 2 | ||||||||||||||||
| G52 | 587 | Bx | 1 | 2 | ||||||||||||||||
| G53 | 650 | AA | 0 | 1 | ||||||||||||||||
| G54 | 654 | Bx | 1 | 0 | ||||||||||||||||
| G55 | 657 | Bx | 1 | 0 | ||||||||||||||||
| G56 | 680 | Bx | 1 | 0 | ||||||||||||||||
| G57 | 720 | Bx | 0 | 1 | ||||||||||||||||
| G58 | NR | Bx | 1 | 0 | ||||||||||||||||
| G59 | NR | Bx | 1 | 0 | ||||||||||||||||
| G60 | NR | Bx | 0 | 1 | ||||||||||||||||
HS: healthy subjects; SP: subjects with psoriasis vulgaris; G: genotype identified assigned in this study; ID: ID González-Galarza (January 2020); NR: not reported, ID; black box = gene detected; white box = gene absent. Significant differences between both groups are in bold. * p = 0.031, OR = 0.448, 95% CI: 0.217 to 0.928; p’ = 1.000, ** p = 0.008, OR = 19.94, 95% CI: 1.135 to 350.400; p ’= 0.480.
Distributions of KIR combined and KIR/HLA composed genotypes in healthy subjects and subjects with psoriasis vulgaris.
| Genotypes | HS | SP | ||||||
|---|---|---|---|---|---|---|---|---|
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| % |
| % |
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| 95% CI |
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| 34 | 31.5 | 43 | 43.0 | NS | |||
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| 25 | 23.1 | 28 | 28.0 | NS | |||
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| 17 | 15.7 | 12 | 12.0 | NS | |||
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| 0.544 |
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| 38 | 35.2 | 48 | 48.0 | NS | |||
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| 21 | 19.4 | 23 | 23.0 | NS | |||
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| 21 | 19.4 | 13 | 13.0 | NS | |||
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| 28 | 25.9 | 16 | 16.0 | NS | |||
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| 53 | 49.1 | 54 | 54.0 | NS | |||
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| 0.192 |
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| 10 | 9.3 | 8 | 8.0 | NS | |||
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| 0.272 |
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| 19 | 17.6 | 20 | 20.0 | NS | |||
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| 0.688 |
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| 6 | 5.6 | 2 | 2.0 | NS | |||
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| 43 | 39.8 | 27 | 27.0 | NS | |||
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| 35 | 32 | 45 | 45.0 | NS | |||
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| 0.286 |
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| 58 | 54 | 41 | 41.0 | NS | |||
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| 91 | 84 | 83 | 83.0 | NS | |||
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| 0.117 |
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| 44 | 41 | 40 | 40 | NS | |||
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| 36 | 33 | 26 | 26 | NS | |||
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| 56 | 52 | 64 | 64 | NS | |||
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| 104 | 96 | 90 | 90 | NS | |||
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| 48 | 44 | 46 | 46 | NS | |||
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| 59 | 55 | 61 | 61 | NS | |||
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| 106 | 98 | 94 | 94 | NS | |||
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| 51 | 47 | 53 | 53 | NS | |||
HS: Healthy Subjects; SP: Subjects with Psoriasis vulgaris; KIR: Killer Immunoglobulin-like Receptor; HLA: Human Leukocyte Antigen; p based on X2 test and adjusted p’ based on Holm-Bonferroni correction for multiple comparisons; NS: Not Significant; OR = Odds Ratio; CI: Confidence Interval; Significant differences between groups are in bold. * At least one positive HLA-Bw4 reaction.
Figure 1Distribution of inhibitory and activating KIR genes in healthy subjects (HS) and subjects with psoriasis vulgaris (SP). * p = 0.047 based on X2 and p’ = 0.282, based on Holm–Bonferroni correction for multiple comparisons.