Literature DB >> 32228402

Applying optimal control theory to a spatial simulation model of sudden oak death: ongoing surveillance protects tanoak while conserving biodiversity.

E H Bussell1, N J Cunniffe1.   

Abstract

Sudden oak death has devastated tree populations across California. However, management might still slow disease spread at local scales. We demonstrate how to unambiguously characterize effective, local management strategies using a detailed, spatially explicit simulation model of spread in a single forest stand. This pre-existing, parameterized simulation is approximated here by a carefully calibrated, non-spatial model, explicitly constructed to be sufficiently simple to allow optimal control theory (OCT) to be applied. By lifting management strategies from the approximate model to the detailed simulation, effective time-dependent controls can be identified. These protect tanoak-a culturally and ecologically important species-while conserving forest biodiversity within a limited budget. We also consider model predictive control, in which both the approximating model and optimal control are repeatedly updated as the epidemic progresses. This allows management which is robust to both parameter uncertainty and systematic differences between simulation and approximate models. Including the costs of disease surveillance then introduces an optimal intensity of surveillance. Our study demonstrates that successful control of sudden oak death is likely to rely on adaptive strategies updated via ongoing surveillance. More broadly, it illustrates how OCT can inform effective real-world management, even when underpinning disease spread models are highly complex.

Entities:  

Keywords:  disease management; model predictive control; optimal control; sudden oak death

Mesh:

Year:  2020        PMID: 32228402      PMCID: PMC7211482          DOI: 10.1098/rsif.2019.0671

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  28 in total

1.  Ecology and Evolution of the Sudden Oak Death Pathogen Phytophthora ramorum.

Authors:  Niklaus J Grünwald; Jared M LeBoldus; Richard C Hamelin
Journal:  Annu Rev Phytopathol       Date:  2019-06-21       Impact factor: 13.078

2.  Optimal control of epidemics in metapopulations.

Authors:  Robert E Rowthorn; Ramanan Laxminarayan; Christopher A Gilligan
Journal:  J R Soc Interface       Date:  2009-03-04       Impact factor: 4.118

3.  Opinion: Mathematical models: a key tool for outbreak response.

Authors:  Eric T Lofgren; M Elizabeth Halloran; Caitlin M Rivers; John M Drake; Travis C Porco; Bryan Lewis; Wan Yang; Alessandro Vespignani; Jeffrey Shaman; Joseph N S Eisenberg; Marisa C Eisenberg; Madhav Marathe; Samuel V Scarpino; Kathleen A Alexander; Rafael Meza; Matthew J Ferrari; James M Hyman; Lauren A Meyers; Stephen Eubank
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-10       Impact factor: 11.205

4.  Evidence-based controls for epidemics using spatio-temporal stochastic models in a Bayesian framework.

Authors:  Hola K Adrakey; George Streftaris; Nik J Cunniffe; Tim R Gottwald; Christopher A Gilligan; Gavin J Gibson
Journal:  J R Soc Interface       Date:  2017-11       Impact factor: 4.118

5.  Optimal control of vaccination rate in an epidemiological model of Clostridium difficile transmission.

Authors:  Brittany Stephenson; Cristina Lanzas; Suzanne Lenhart; Judy Day
Journal:  J Math Biol       Date:  2017-05-08       Impact factor: 2.259

6.  Decision-making for foot-and-mouth disease control: Objectives matter.

Authors:  William J M Probert; Katriona Shea; Christopher J Fonnesbeck; Michael C Runge; Tim E Carpenter; Salome Dürr; M Graeme Garner; Neil Harvey; Mark A Stevenson; Colleen T Webb; Marleen Werkman; Michael J Tildesley; Matthew J Ferrari
Journal:  Epidemics       Date:  2015-12-10       Impact factor: 4.396

7.  Bayesian inference for an emerging arboreal epidemic in the presence of control.

Authors:  Matthew Parry; Gavin J Gibson; Stephen Parnell; Tim R Gottwald; Michael S Irey; Timothy C Gast; Christopher A Gilligan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-07       Impact factor: 11.205

Review 8.  Impacts of biodiversity on the emergence and transmission of infectious diseases.

Authors:  Felicia Keesing; Lisa K Belden; Peter Daszak; Andrew Dobson; C Drew Harvell; Robert D Holt; Peter Hudson; Anna Jolles; Kate E Jones; Charles E Mitchell; Samuel S Myers; Tiffany Bogich; Richard S Ostfeld
Journal:  Nature       Date:  2010-12-02       Impact factor: 49.962

9.  Modeling Epidemics in Seed Systems and Landscapes To Guide Management Strategies: The Case of Sweet Potato in Northern Uganda.

Authors:  K F Andersen; C E Buddenhagen; P Rachkara; R Gibson; S Kalule; D Phillips; K A Garrett
Journal:  Phytopathology       Date:  2019-08-13       Impact factor: 4.025

10.  Cost-effective control of plant disease when epidemiological knowledge is incomplete: modelling Bahia bark scaling of citrus.

Authors:  Nik J Cunniffe; Francisco F Laranjeira; Franco M Neri; R Erik DeSimone; Christopher A Gilligan
Journal:  PLoS Comput Biol       Date:  2014-08-07       Impact factor: 4.475

View more
  2 in total

1.  Optimising risk-based surveillance for early detection of invasive plant pathogens.

Authors:  Alexander J Mastin; Timothy R Gottwald; Frank van den Bosch; Nik J Cunniffe; Stephen Parnell
Journal:  PLoS Biol       Date:  2020-10-12       Impact factor: 8.029

2.  Optimal strategies to protect a sub-population at risk due to an established epidemic.

Authors:  Elliott H Bussell; Nik J Cunniffe
Journal:  J R Soc Interface       Date:  2022-01-12       Impact factor: 4.118

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.