| Literature DB >> 32226519 |
Simeng Zhang1,2,3, Dan Zang1,2,3, Yu Cheng1,2,3, Zhi Li1,2,3, Bowen Yang2,3, Tianshu Guo1,2,3, Yunpeng Liu1,2,3, Xiujuan Qu1,2,3, Xiaofang Che1,2,3.
Abstract
Peritoneal metastasis is the most common pattern in advanced gastric cancer and can predict poor disease prognosis. Early detection of peritoneal tumor dissemination is restricted by small peritoneal deposits. Therefore, it is critical to identify a novel predictive marker and to explore the potential mechanism associated with this process. In the present study, one module that correlated with peritoneal metastasis was identified. Enrichment analysis indicated that the Focal adhesion and the PI3K-Akt signaling pathway were the most significant pathways. Following network and Molecular Complex Detection (MCODE) analysis, the hub-gene cluster that consisted of 19 genes was selected. Methionine sulfoxide reductase B3 (MSRB3) was identified as a seed gene. Survival analysis indicated that high expression levels of MSRB3 were independent predictors of peritoneal disease-free survival (pDFS) as determined by univariate (HR 8.559, 95% CI; 3.339-21.937; P<.001) and multivariate Cox analysis (HR 3.982, 95% CI; 1.509-10.509; P=.005). Furthermore, patients with high levels of MSRB3 exhibited a significantly lower Overall Survival (OS) (log-rank P = 0.007). The external validation was performed by the (The Cancer Genome Atlas (TCGA)) (log-rank P = 0.037) and Kaplan Meier-plotter (KMplotter) (log-rank P = 0.031) data. In vitro experiments confirmed that MSRB3 was a critical protein in regulating gastric cancer cell proliferation and migration. In conclusion, High expression levels of MSRB3 in GC can predict peritoneal metastasis and recurrence as well as poor prognosis. Furthermore, MSRB3 was involved in the regulation of the proliferation and migration of GC cells. © The author(s).Entities:
Keywords: MSRB3; PI3K-Akt; WGCNA; gastric cancer; peritoneal metastasis
Year: 2020 PMID: 32226519 PMCID: PMC7086253 DOI: 10.7150/jca.39645
Source DB: PubMed Journal: J Cancer ISSN: 1837-9664 Impact factor: 4.207
Characteristics of GSE62254 cohort
| Characteristic | Number of Patients(%) |
|---|---|
| Age(years) | |
| Median(Range) | 63 (24-86) |
| Gender | |
| Male | 195 (66.1) |
| Female | 100 (33.9) |
| T stage | |
| T2 | 184 (62.4) |
| T3 | 90 (30.5) |
| T4 | 21 (7.1) |
| N stage | |
| N0 | 38 (12.9) |
| N1 | 128 (43.4) |
| N2 | 79 (26.8) |
| N3 | 50 (16.9) |
| M stage | |
| M0 | 268 (90.8) |
| M1 | 27 (9.2) |
| TNMstage | |
| I | 30 (10.2) |
| II | 94 (31.9) |
| III | 95 (32.2) |
| IV | 76 (25.8) |
| Lauren | |
| Intestinal | 144 (48.8) |
| Diffuse | 134 (45.4) |
| Mixed | 17 (5.8) |
| Recurrence | |
| Yes | 124 (42) |
| No | 153 (51.9) |
| unknown | 18 (6.1) |
| First Site of Recurrence | |
| liver | 36 (12.2) |
| peritonealseeding | 54 (18.3) |
| ascitesclinicallysignificant | 47 (15.9) |
| intraabdominal_LN | 49 (16.6) |
| distantlymphnode | 4 (1.4) |
| bone | 7 (2.4) |
Figure 1Construction of co‑expression module of gastric cancer with peritoneal metastasis. (A) The correlation of different soft threshold power values and scale independence of co-expression network. (B) The effect of soft threshold power values on mean connectivity of co-expression network. (C) The hierarchical cluster dendrogram was used to identify co-expression gene modules and each module was assigned with different colors. (D) Gene modules with similar expression profiles were merged according to the threshold (Red line) by calculating eigengenes of each module. (E) Heatmap plot of the adjacencies of modules. Red means positive correlation and blue means negative correlation.
Figure 2Module-trait correlations and functional enrichment analysis. (A) Each row corresponds to module eigengene, column to a clinical trait. Numbers in each table describe the correlation and p value of module eigengenes and trait. The table is color-coded by correlation according to the color legend. (B) The correlation of genes in blue module with trait of ascites clinically significant. (C) The correlation of genes in blue module with trait of peritoneal seeding. (D) Significantly enriched GO annotations of blue module. (E) Significantly enriched KEGG pathways of blue module.
Figure 3Identification of vital candidate marker in of peritoneal metastasis. (A) PPI network of genes in blue module and consists of 525 nodes and 6140 edges. (B) Hub network extracted from (A) by calculating topological features and consists of 167 nodes and 3633 edges. (C) Top significant sub-module cluster was identified by using MCODE algorithm.
Figure 4Prognostic value of MSRB3 in gastric cancer. (A) The expression level of MSRB3 in peritoneal metastasis group (PM), non-metastasis group and non-peritoneal metastasis group. Data are mean±SD. ****P<0.0001 (Student's t-test). (B) Receiver operating characteristic curve for MSRB3 expression level and peritoneal metastasis. (C) peritoneal Disease-Free Survival (pDFS) of MSRB3 in TCGA cohort by Kaplan-Meier (KM) analysis (log-rank P < 0.001). (D) Overall Survival (OS) of MSRB3 in TCGA cohort by Kaplan-Meier (KM) analysis (log-rank P = 0.007). (E) External validation of overal survival of TCGA and KMplotter cohort by Kaplan-Meier (KM) analysis (log-rank P = 0.037, P = 0.031, respectively).
Univariate analysis of peritoneal metastasis in GSE62254 by logistics regression model
| Characteristic | Peritoneal seed | Ascites Positive | ||||
|---|---|---|---|---|---|---|
| P value | OR | 95%CI | P value | OR | 95%CI | |
| Sex | .511 | 0.719 | 0.269-1.922 | .324 | 1.712 | 0.588-4.986 |
| Age | .020* | 0.956 | 0921-0.993 | .141 | 0.972 | 0.935-1.010 |
| Tstage | .566 | 1.345 | 0.489-3.694 | .485 | 1.424 | 0.529-3.837 |
| Nstage | .775 | 0.876 | 0.355-2.165 | .728 | 1.161 | 0.501-2.692 |
| pTNMStage | .069 | 3.244 | 0.913-11.531 | .075 | 3.115 | 0.893-10.866 |
| Lauren | .084 | 2.437 | 0.886-6.700 | .030* | 3.169 | 1.119-8.979 |
| MSRB3 | .002* | 8.467 | 2.201-32.576 | .005* | 7.33 | 1.853-29.002 |
*P<0.05; OR, odds ratio; CI, confidence interval.
Univariate and multivariate analysis of peritoneal disease-free survival in GSE62254 by Cox regression model
| Characteristic | No. | Univariate analysis | Multivariate analysis | |||||
|---|---|---|---|---|---|---|---|---|
| Patients | Evens | HR | 95%CI | P Value | HR | 95%CI | P Value | |
| Age(years) | 190 | 38 | 0.959 | 0.934-0.985 | 0.002 | |||
| Gender | ||||||||
| Female | 72 | 20 | 1 | |||||
| Male | 118 | 18 | 0.512 | 0.271-0.968 | 0.039 | |||
| T stage | ||||||||
| T2 | 122 | 9 | 1 | |||||
| T3 | 56 | 23 | 7.56 | 3.495-16.357 | <0.001 | |||
| T4 | 12 | 6 | 7.916 | 2.812-22.283 | <0.001 | |||
| N stage | ||||||||
| N0 | 29 | 2 | 1 | |||||
| N1 | 90 | 10 | 1.706 | 0.373-7.797 | 0.491 | |||
| N2 | 46 | 13 | 5.596 | 1.260-24.857 | 0.024 | |||
| N3 | 25 | 13 | 13.726 | 3.085-61.079 | 0.001 | |||
| TNMstage | ||||||||
| I | 24 | 1 | 1 | |||||
| II | 67 | 3 | 1.051 | 0.109-10.120 | 0.966 | 0.453 | 0.045-4.521 | 0.5 |
| III | 61 | 14 | 6.617 | 0.869-50.389 | 0.068 | 1.812 | 0.227-14.483 | 0.575 |
| IV | 38 | 20 | 21.652 | 2.898-161.779 | 0.003 | 8.951 | 1.153-69.512 | 0.036 |
| Lauren | ||||||||
| Intestinal | 88 | 4 | 1 | |||||
| Diffuse | 94 | 33 | 8.684 | 3.074-24.534 | <0.001 | 6.804 | 2.281-20.295 | 0.001 |
| Mixed | 8 | 1 | 3.753 | 0.419-33.605 | 0.237 | 1.719 | 0.189-15.627 | 0.631 |
| MSRB3 | ||||||||
| Low | 98 | 5 | 1 | |||||
| High | 92 | 33 | 8.559 | 3.339-21.937 | <0.001 | 3.982 | 1.509-10.509 | 0.005 |
Figure 5Experimental validation by gastric cancer cells. (A) Western blot was used to detect the expression level of MSRB3 in different gastric cancer cell lines. (B) MKN45 cell was knockdown of MSRB3 gene and western blot was used to detect the expression level of MSRB3. (C) MKN45 cell was knockdown of MSRB3 gene. MTT assay was used to detect the cell proliferation rates in 0h, 24h, 48h and 72h. Data are means ± SD in three independent experiment (*P < 0.05). (D) Transwell assay was performed to detect the migration of MKN45 cell after silencing MSRB3 for 48h. Data are means ± SD in three independent experiment (****P < 0.0001). (E) Western blot was used to assess the expression levels of phosphor-Akt, Akt, phosohor-Erk, Erk and Actin in MKN45 cells by silencing MSRB3 for 48h.