Literature DB >> 32217361

Stereospecific synthesis of methyl 2-amino-2,4-dideoxy-6S-deuterio-α-D-xylo-hexopyranoside and methyl 2-amino-2,4-dideoxy-6S-deuterio-4-propyl-α-d-glucopyranoside: Side chain conformation of the novel aminoglycoside antibiotic propylamycin.

Michael G Pirrone1, Takahiko Matsushita2, Andrea Vasella3, David Crich4.   

Abstract

The stereospecific syntheses of methyl 2-amino-2,4-dideoxy-4-C-propyl-α-d-glucopyranoside and of methyl 2-amino-2,4-dideoxy-α-D-xylo-hexopyranoside and of their 6S-deuterioisotopomers are described as models for ring I of the aminoglycoside antibiotics propylamycin and 4'-deoxyparomomycin, respectively. Analysis of the 1H NMR spectra of these compounds and of methyl 2-amino-2-deoxy-α-d-glucopyranoside, a model for paromomycin itself, reveals that neither deoxygenation at the 4-position, nor substitution of the C-O bond at the 4-postion by a C-C bond significantly changes the distribution of the side chain population between the three possible staggered conformations. From this it is concluded that the beneficial effect on antiribosomal and antibacterial activity of the propyl group in propylamycin does not derive from a change in side chain conformation. Rather, enhanced basicity of the ring oxygen and increased hydrophobicity and/or solvation effects are implicated.
Copyright © 2020 Elsevier Ltd. All rights reserved.

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Year:  2020        PMID: 32217361      PMCID: PMC7237021          DOI: 10.1016/j.carres.2020.107984

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  15 in total

1.  Sensitivities of some imidazole-1-sulfonyl azide salts.

Authors:  Niko Fischer; Ethan D Goddard-Borger; Robert Greiner; Thomas M Klapötke; Brian W Skelton; Jörg Stierstorfer
Journal:  J Org Chem       Date:  2012-02-09       Impact factor: 4.354

2.  [Not Available].

Authors:  A FURST; P A PLATTNER
Journal:  Helv Chim Acta       Date:  1949       Impact factor: 2.164

3.  Synthesis of Bradyrhizose from d-Glucose.

Authors:  Philemon Ngoje; David Crich
Journal:  Org Lett       Date:  2019-12-26       Impact factor: 6.005

4.  Design, Multigram Synthesis, and in Vitro and in Vivo Evaluation of Propylamycin: A Semisynthetic 4,5-Deoxystreptamine Class Aminoglycoside for the Treatment of Drug-Resistant Enterobacteriaceae and Other Gram-Negative Pathogens.

Authors:  Takahiko Matsushita; Girish C Sati; Nuwan Kondasinghe; Michael G Pirrone; Takayuki Kato; Prabuddha Waduge; Harshitha Santhosh Kumar; Adrian Cortes Sanchon; Malgorzata Dobosz-Bartoszek; Dimitri Shcherbakov; Mario Juhas; Sven N Hobbie; Thomas Schrepfer; Christine S Chow; Yury S Polikanov; Jochen Schacht; Andrea Vasella; Erik C Böttger; David Crich
Journal:  J Am Chem Soc       Date:  2019-03-13       Impact factor: 15.419

5.  Carba-sugars activate the glmS-riboswitch of Staphylococcus aureus.

Authors:  Christina E Lünse; Magnus S Schmidt; Valentin Wittmann; Günter Mayer
Journal:  ACS Chem Biol       Date:  2011-04-20       Impact factor: 5.100

6.  An efficient, inexpensive, and shelf-stable diazotransfer reagent: imidazole-1-sulfonyl azide hydrochloride.

Authors:  Ethan D Goddard-Borger; Robert V Stick
Journal:  Org Lett       Date:  2007-08-22       Impact factor: 6.005

7.  Structure-Based Design and Synthesis of Apramycin-Paromomycin Analogues: Importance of the Configuration at the 6'-Position and Differences between the 6'-Amino and Hydroxy Series.

Authors:  Appi Reddy Mandhapati; Guanyu Yang; Takayuki Kato; Dimitri Shcherbakov; Sven N Hobbie; Andrea Vasella; Erik C Böttger; David Crich
Journal:  J Am Chem Soc       Date:  2017-10-09       Impact factor: 15.419

Review 8.  Molecular recognition of aminoglycoside antibiotics by ribosomal RNA and resistance enzymes: an analysis of x-ray crystal structures.

Authors:  Quentin Vicens; Eric Westhof
Journal:  Biopolymers       Date:  2003-09       Impact factor: 2.505

9.  Synthesis of Conformationally-Locked cis- and trans-Bicyclo[4.4.0] Mono-, Di-, and Trioxadecane Modifications of Galacto- and Glucopyranose; Experimental Limiting 3JH,H Coupling Constants for the Estimation of Carbohydrate Side Chain Populations and Beyond.

Authors:  Harsha Amarasekara; Suresh Dharuman; Takayuki Kato; David Crich
Journal:  J Org Chem       Date:  2018-01-03       Impact factor: 4.354

10.  Identification and evaluation of improved 4'-O-(alkyl) 4,5-disubstituted 2-deoxystreptamines as next-generation aminoglycoside antibiotics.

Authors:  Stefan Duscha; Heithem Boukari; Dimitri Shcherbakov; Sumantha Salian; Sandrina Silva; Ann Kendall; Takayuki Kato; Rashid Akbergenov; Deborah Perez-Fernandez; Bruno Bernet; Swapna Vaddi; Pia Thommes; Jochen Schacht; David Crich; Andrea Vasella; Erik C Böttger
Journal:  MBio       Date:  2014-09-30       Impact factor: 7.867

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  5 in total

1.  Influence of ring size in conformationally restricted ring I analogs of paromomycin on antiribosomal and antibacterial activity.

Authors:  Michael G Pirrone; Sven N Hobbie; Andrea Vasella; Erik C Böttger; David Crich
Journal:  RSC Med Chem       Date:  2021-08-05

2.  Glycoside Hydrolases Restrict the Side Chain Conformation of Their Substrates To Gain Additional Transition State Stabilization.

Authors:  Jonathan C K Quirke; David Crich
Journal:  J Am Chem Soc       Date:  2020-09-24       Impact factor: 15.419

3.  Predictive Analysis of the Side Chain Conformation of the Higher Carbon Sugars: Application to the Preorganization of the Aminoglycoside Ring 1 Side Chain for Binding to the Bacterial Ribosomal Decoding A Site.

Authors:  Michael G Pirrone; Marina Gysin; Klara Haldimann; Sven N Hobbie; Andrea Vasella; David Crich
Journal:  J Org Chem       Date:  2020-09-23       Impact factor: 4.354

4.  Influence of substitution at the 5α-Position on the side chain conformation of glucopyranosides.

Authors:  Parasuraman Rajasekaran; Michael G Pirrone; David Crich
Journal:  Carbohydr Res       Date:  2021-01-30       Impact factor: 2.104

5.  Synthesis and Antibacterial Activity of Propylamycin Derivatives Functionalized at the 5''- and Other Positions with a View to Overcoming Resistance Due to Aminoglycoside Modifying Enzymes.

Authors:  Dimitrijs Lubriks; Rimants Zogota; Vikram A Sarpe; Takahiko Matsushita; Girish C Sati; Klara Haldimann; Marina Gysin; Erik C Böttger; Andrea Vasella; Edgars Suna; Sven N Hobbie; David Crich
Journal:  ACS Infect Dis       Date:  2021-06-11       Impact factor: 5.578

  5 in total

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