Literature DB >> 32217284

A novel kernel Wasserstein distance on Gaussian measures: An application of identifying dental artifacts in head and neck computed tomography.

Jung Hun Oh1, Maryam Pouryahya2, Aditi Iyer2, Aditya P Apte2, Joseph O Deasy2, Allen Tannenbaum3.   

Abstract

The Wasserstein distance is a powerful metric based on the theory of optimal mass transport. It gives a natural measure of the distance between two distributions with a wide range of applications. In contrast to a number of the common divergences on distributions such as Kullback-Leibler or Jensen-Shannon, it is (weakly) continuous, and thus ideal for analyzing corrupted and noisy data. Until recently, however, no kernel methods for dealing with nonlinear data have been proposed via the Wasserstein distance. In this work, we develop a novel method to compute the L2-Wasserstein distance in reproducing kernel Hilbert spaces (RKHS) called kernel L2-Wasserstein distance, which is implemented using the kernel trick. The latter is a general method in machine learning employed to handle data in a nonlinear manner. We evaluate the proposed approach in identifying computed tomography (CT) slices with dental artifacts in head and neck cancer, performing unsupervised hierarchical clustering on the resulting Wasserstein distance matrix that is computed on imaging texture features extracted from each CT slice. We further compare the performance of kernel Wasserstein distance with alternatives including kernel Kullback-Leibler divergence we previously developed. Our experiments show that the kernel approach outperforms classical non-kernel approaches in identifying CT slices with artifacts.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Kernel Kullback–Leibler divergence; Kernel Wasserstein distance; Kernel trick; Reproducing kernel Hilbert space

Mesh:

Year:  2020        PMID: 32217284      PMCID: PMC7237301          DOI: 10.1016/j.compbiomed.2020.103731

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  13 in total

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5.  Fast kernel discriminant analysis for classification of liver cancer mass spectra.

Authors:  Jung Hun Oh; Jean Gao
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2011 Nov-Dec       Impact factor: 3.710

6.  Optimal Transport in Reproducing Kernel Hilbert Spaces: Theory and Applications.

Authors:  Zhen Zhang; Mianzhi Wang; Arye Nehorai
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7.  Automatic classification of dental artifact status for efficient image veracity checks: effects of image resolution and convolutional neural network depth.

Authors:  Mattea L Welch; Chris McIntosh; Tom G Purdie; Leonard Wee; Alberto Traverso; Andre Dekker; Benjamin Haibe-Kains; David A Jaffray
Journal:  Phys Med Biol       Date:  2020-01-10       Impact factor: 3.609

8.  Optimal transport for Gaussian mixture models.

Authors:  Yongxin Chen; Tryphon T Georgiou; Allen Tannenbaum
Journal:  IEEE Access       Date:  2018-12-27       Impact factor: 3.367

9.  Pediatric Sarcoma Data Forms a Unique Cluster Measured via the Earth Mover's Distance.

Authors:  Yongxin Chen; Filemon Dela Cruz; Romeil Sandhu; Andrew L Kung; Prabhjot Mundi; Joseph O Deasy; Allen Tannenbaum
Journal:  Sci Rep       Date:  2017-08-01       Impact factor: 4.379

10.  A kernel-based approach for detecting outliers of high-dimensional biological data.

Authors:  Jung Hun Oh; Jean Gao
Journal:  BMC Bioinformatics       Date:  2009-04-29       Impact factor: 3.169

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  1 in total

1.  Reproducibility of radiomic features using network analysis and its application in Wasserstein k-means clustering.

Authors:  Jung Hun Oh; Aditya P Apte; Evangelia Katsoulakis; Nadeem Riaz; Vaios Hatzoglou; Yao Yu; Usman Mahmood; Harini Veeraraghavan; Maryam Pouryahya; Aditi Iyer; Amita Shukla-Dave; Allen Tannenbaum; Nancy Y Lee; Joseph O Deasy
Journal:  J Med Imaging (Bellingham)       Date:  2021-04-30
  1 in total

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