Literature DB >> 32216388

Extrinsic Noise and Heavy-Tailed Laws in Gene Expression.

Lucy Ham1, Rowan D Brackston2, Michael P H Stumpf1,2.   

Abstract

Noise in gene expression is one of the hallmarks of life at the molecular scale. Here we derive analytical solutions to a set of models describing the molecular mechanisms underlying transcription of DNA into RNA. Our ansatz allows us to incorporate the effects of extrinsic noise-encompassing factors external to the transcription of the individual gene-and discuss the ramifications for heterogeneity in gene product abundance that has been widely observed in single cell data. Crucially, we are able to show that heavy-tailed distributions of RNA copy numbers cannot result from the intrinsic stochasticity in gene expression alone, but must instead reflect extrinsic sources of variability.

Year:  2020        PMID: 32216388     DOI: 10.1103/PhysRevLett.124.108101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  9 in total

1.  Gene Networks with Transcriptional Bursting Recapitulate Rare Transient Coordinated High Expression States in Cancer.

Authors:  Lea Schuh; Michael Saint-Antoine; Eric M Sanford; Benjamin L Emert; Abhyudai Singh; Carsten Marr; Arjun Raj; Yogesh Goyal
Journal:  Cell Syst       Date:  2020-04-22       Impact factor: 10.304

2.  Effects of cell cycle variability on lineage and population measurements of messenger RNA abundance.

Authors:  Ruben Perez-Carrasco; Casper Beentjes; Ramon Grima
Journal:  J R Soc Interface       Date:  2020-07-08       Impact factor: 4.118

3.  Modeling bursty transcription and splicing with the chemical master equation.

Authors:  Gennady Gorin; Lior Pachter
Journal:  Biophys J       Date:  2022-02-07       Impact factor: 4.033

4.  Pathway dynamics can delineate the sources of transcriptional noise in gene expression.

Authors:  Lucy Ham; Marcel Jackson; Michael Ph Stumpf
Journal:  Elife       Date:  2021-10-12       Impact factor: 8.140

5.  Low protein expression enhances phenotypic evolvability by intensifying selection on folding stability.

Authors:  Shraddha Karve; Pouria Dasmeh; Jia Zheng; Andreas Wagner
Journal:  Nat Ecol Evol       Date:  2022-07-07       Impact factor: 19.100

6.  RNA velocity unraveled.

Authors:  Gennady Gorin; Meichen Fang; Tara Chari; Lior Pachter
Journal:  PLoS Comput Biol       Date:  2022-09-12       Impact factor: 4.779

7.  A single-cell resolved cell-cell communication model explains lineage commitment in hematopoiesis.

Authors:  Megan K Rommelfanger; Adam L MacLean
Journal:  Development       Date:  2021-12-22       Impact factor: 6.868

8.  Concentration fluctuations in growing and dividing cells: Insights into the emergence of concentration homeostasis.

Authors:  Chen Jia; Abhyudai Singh; Ramon Grima
Journal:  PLoS Comput Biol       Date:  2022-10-04       Impact factor: 4.779

Review 9.  Can Systems Biology Advance Clinical Precision Oncology?

Authors:  Andrea Rocca; Boris N Kholodenko
Journal:  Cancers (Basel)       Date:  2021-12-16       Impact factor: 6.575

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.