Literature DB >> 32214002

Predictive Analyses of Prognostic-Related Immune Genes and Immune Infiltrates for Glioblastoma.

Ping Liang1, Yi Chai1, He Zhao2, Guihuai Wang1.   

Abstract

Glioblastoma (GBM), the most common and aggressive brain tumor, has a very poor outcome and high tumor recurrence rate. The immune system has positive interactions with the central nervous system. Despite many studies investigating immune prognostic factors, there is no effective model to identify predictive biomarkers for GBM. Genomic data and clinical characteristic information of patients with GBM were evaluated by Kaplan-Meier analysis and proportional hazard modeling. Deseq2 software was used for differential expression analysis. Immune-related genes from ImmPort Shared Data and the Cistrome Project were evaluated. The model performance was determined based on the area under the receiver operating characteristic (ROC) curve. CIBERSORT was used to assess the infiltration of immune cells. The results of differential expression analyses showed a significant difference in the expression levels of 2942 genes, comprising 1338 upregulated genes and 1604 downregulated genes (p < 0.05). A population of 24 immune-related genes that predicted GBM patient survival was identified. A risk score model established on the basis of the expressions of the 24 immune-related genes was used to evaluate a favorable outcome of GBM. Further validation using the ROC curve confirmed the model was an independent predictor of GBM (AUC = 0.869). In the GBM microenvironment, eosinophils, macrophages, activated NK cells, and follicular helper T cells were associated with prognostic risk. Our study confirmed the importance of immune-related genes and immune infiltrates in predicting GBM patient prognosis.

Entities:  

Keywords:  glioblastoma; immune-related; prediction value; prognosis

Year:  2020        PMID: 32214002     DOI: 10.3390/diagnostics10030177

Source DB:  PubMed          Journal:  Diagnostics (Basel)        ISSN: 2075-4418


  8 in total

1.  Network Pharmacology and Inflammatory Microenvironment Strategy Approach to Finding the Potential Target of Siraitia grosvenorii (Luo Han Guo) for Glioblastoma.

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Journal:  Front Genet       Date:  2021-12-20       Impact factor: 4.599

Review 2.  Icariin, an Up-and-Coming Bioactive Compound Against Neurological Diseases: Network Pharmacology-Based Study and Literature Review.

Authors:  Shuangqiu Wang; Jiarui Ma; Yanqi Zeng; Guowei Zhou; Yuxuan Wang; Wenjuan Zhou; Xiaohe Sun; Minghua Wu
Journal:  Drug Des Devel Ther       Date:  2021-08-20       Impact factor: 4.162

3.  Enriched Environment Cues Suggest a New Strategy to Counteract Glioma: Engineered rAAV2-IL-15 Microglia Modulate the Tumor Microenvironment.

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Journal:  Front Immunol       Date:  2021-09-06       Impact factor: 7.561

4.  Prognostic impact of a lymphocyte activation-associated gene signature in GBM based on transcriptome analysis.

Authors:  Yujia Lan; Erjie Zhao; Xinxin Zhang; Xiaojing Zhu; Linyun Wan; Suru A; Yanyan Ping; Yihan Wang
Journal:  PeerJ       Date:  2021-08-25       Impact factor: 2.984

5.  Immune cell gene expression signatures in diffuse glioma are associated with IDH mutation status, patient outcome and malignant cell state, and highlight the importance of specific cell subsets in glioma biology.

Authors:  Bharati Mehani; Saleembhasha Asanigari; Hye-Jung Chung; Karen Dazelle; Arashdeep Singh; Sridhar Hannenhalli; Kenneth Aldape
Journal:  Acta Neuropathol Commun       Date:  2022-02-10       Impact factor: 7.801

6.  Prognostic value of programmed death ligand 1 (PD-L1) in glioblastoma: a systematic review, meta-analysis and validation based on dataset.

Authors:  Huan Wang; Youchao Xiao; Xingguang Ren; Dahai Wan
Journal:  Bioengineered       Date:  2021-12       Impact factor: 3.269

Review 7.  The War Is on: The Immune System against Glioblastoma-How Can NK Cells Drive This Battle?

Authors:  Lucas Henrique Rodrigues da Silva; Luana Correia Croda Catharino; Viviane Jennifer da Silva; Gabriela Coeli Menezes Evangelista; José Alexandre Marzagão Barbuto
Journal:  Biomedicines       Date:  2022-02-08

8.  Identification of an Immune-Related Prognostic Signature for Glioblastoma by Comprehensive Bioinformatics and Experimental Analyses.

Authors:  Shengda Ye; Bin Yang; Tingbao Zhang; Wei Wei; Zhiqiang Li; Jincao Chen; Xiang Li
Journal:  Cells       Date:  2022-09-26       Impact factor: 7.666

  8 in total

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