Literature DB >> 32212717

Programming the Sequential Release of DNA.

Dominic Scalise, Moshe Rubanov, Katherine Miller, Leo Potters, Madeline Noble, Rebecca Schulman.   

Abstract

This study presents a mechanism for releasing a series of different short DNA sequences from sequestered complexes, one after another, using coupled biochemical reactions. The process uses stages of coupled DNA strand-displacement reactions that first release an output molecule and then trigger the initiation of the next release stage. We demonstrate the sequential release of 25 nM of four different sequences of DNA over a day, both with and without a centralized "clock" mechanism to regulate release timing. We then demonstrate how the presence of a target input molecule can determine which of several different release pathways are activated, analogous to branching conditional statements in computer programming. This sequential release circuit offers a means to schedule downstream chemical events, such as steps in the assembly of a nanostructure, or stages in a material's response to a stimulus.

Keywords:  DNA nanotechnology; DNA strand-displacement; chemical computing; programmable matter

Mesh:

Substances:

Year:  2020        PMID: 32212717     DOI: 10.1021/acssynbio.9b00398

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  4 in total

1.  Controlled Release in Hydrogels Using DNA Nanotechnology.

Authors:  Chih-Hsiang Hu; Remi Veneziano
Journal:  Biomedicines       Date:  2022-01-19

2.  Molecular communication relays for dynamic cross-regulation of self-sorting fibrillar self-assemblies.

Authors:  Saskia Groeer; Katja Schumann; Sebastian Loescher; Andreas Walther
Journal:  Sci Adv       Date:  2021-11-24       Impact factor: 14.136

3.  Cotranscriptionally encoded RNA strand displacement circuits.

Authors:  Samuel W Schaffter; Elizabeth A Strychalski
Journal:  Sci Adv       Date:  2022-03-23       Impact factor: 14.136

4.  A model of spatio-temporal regulation within biomaterials using DNA reaction-diffusion waveguides.

Authors:  Phillip J Dorsey; Dominic Scalise; Rebecca Schulman
Journal:  R Soc Open Sci       Date:  2022-08-24       Impact factor: 3.653

  4 in total

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