Literature DB >> 32212037

The Goodwin Oscillator and its Legacy.

Didier Gonze1, Peter Ruoff2.   

Abstract

In the 1960's Brian Goodwin published a couple of mathematical models showing how feedback inhibition can lead to oscillations and discussed possible implications of this behaviour for the physiology of the cell. He also presented key ideas about the rich dynamics that may result from the coupling between such biochemical oscillators. Goodwin's work motivated a series of theoretical investigations aiming at identifying minimal mechanisms to generate limit cycle oscillations and deciphering design principles of biological oscillators. The three-variable Goodwin model (adapted by Griffith) can be seen as a core model for a large class of biological systems, ranging from ultradian to circadian clocks. We summarize here main ideas and results brought by Goodwin and review a couple of modeling works directly or indirectly inspired by Goodwin's findings.

Keywords:  Circadian rhythms; Feedback inhibition; Goodwin model; Limit cycle oscillations

Year:  2020        PMID: 32212037     DOI: 10.1007/s10441-020-09379-8

Source DB:  PubMed          Journal:  Acta Biotheor        ISSN: 0001-5342            Impact factor:   1.774


  8 in total

1.  Diverse role of decoys on emergence and precision of oscillations in a biomolecular clock.

Authors:  Supravat Dey; Abhyudai Singh
Journal:  Biophys J       Date:  2021-11-11       Impact factor: 4.033

2.  Combined multiple transcriptional repression mechanisms generate ultrasensitivity and oscillations.

Authors:  Eui Min Jeong; Yun Min Song; Jae Kyoung Kim
Journal:  Interface Focus       Date:  2022-04-15       Impact factor: 4.661

Review 3.  Circadian rhythms and the HPA axis: A systems view.

Authors:  Ioannis P Androulakis
Journal:  WIREs Mech Dis       Date:  2021-01-12

4.  Multiple random phosphorylations in clock proteins provide long delays and switches.

Authors:  Abhishek Upadhyay; Daniela Marzoll; Axel Diernfellner; Michael Brunner; Hanspeter Herzel
Journal:  Sci Rep       Date:  2020-12-17       Impact factor: 4.379

5.  Mathematical analysis of robustness of oscillations in models of the mammalian circadian clock.

Authors:  Xiangyu Yao; Benjamin L Heidebrecht; Jing Chen; John J Tyson
Journal:  PLoS Comput Biol       Date:  2022-03-18       Impact factor: 4.475

Review 6.  Exploiting Information and Control Theory for Directing Gene Expression in Cell Populations.

Authors:  Lucas Henrion; Mathéo Delvenne; Fatemeh Bajoul Kakahi; Fabian Moreno-Avitia; Frank Delvigne
Journal:  Front Microbiol       Date:  2022-04-25       Impact factor: 5.640

7.  Kinetics and mechanisms of catalyzed dual-E (antithetic) controllers.

Authors:  Qaiser Waheed; Huimin Zhou; Peter Ruoff
Journal:  PLoS One       Date:  2022-08-18       Impact factor: 3.752

Review 8.  Bacterial degrons in synthetic circuits.

Authors:  Prajakta Jadhav; Yanyan Chen; Nicholas Butzin; Javier Buceta; Arantxa Urchueguía
Journal:  Open Biol       Date:  2022-08-17       Impact factor: 7.124

  8 in total

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