Literature DB >> 32211959

Genomic portrait of Odisha, India drawn by using 21 autosomal STR markers.

Subhasish Sahoo1, Rashmita Samal1, Suchismeeta Behera1, Aruna Kumar Swain1, Sumit Biswas2, Pankaj Shrivastava3, R K Kumawat4, Gyaneshwer Chaubey5, Hirak Ranjan Dash6.   

Abstract

In order to find out the genetic diversity in the eastern Indian population of Odisha consisting of various linguistic and ethnic groups, we undertook a study on 508 unrelated healthy individuals belonging to Odisha, India. We assessed genetic variation and compared the data with published literature of Indian population consisting of different ethnic groups from different geographical areas using 21 autosomal STR markers. The most polymorphic and discriminatory STR locus in the studied population was found to be SE33 with the calculated values of 0.94 and 0.991 respectively for both the parameters. The combined power of discrimination (CPD) and combined power of exclusion (CPE) were found to be 1 and 0.999999999704865 respectively. The combined probability of match (CPm) and combined paternity index (CPI) for all 21 autosomal STR loci were found to be 8.01 × 10-26 and 3.45 × 109 respectively. Though, the studied eastern Indian population of Odisha shared its closest genetic affinity with nearest Indian geographical regions, i.e., the population of Jharkhand which is geographically located in eastern India as well as the Central Indian population.

Keywords:  Discrimination; Genetic diversity; Odisha; Polymorphic; STRs

Mesh:

Year:  2020        PMID: 32211959     DOI: 10.1007/s00414-020-02281-5

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  8 in total

1.  Genetic diversity of autosomal STRs in eleven populations of India.

Authors:  Tania Ghosh; D Kalpana; Sanjukta Mukerjee; Meeta Mukherjee; Anil Kumar Sharma; Subhankar Nath; Varsha Rajesh Rathod; Mukesh Kumar Thakar; Ganga Nath Jha
Journal:  Forensic Sci Int Genet       Date:  2010-02-08       Impact factor: 4.882

2.  A genetic portrait of Oraon Indian tribe drawn with 15 autosomal and 17 Y chromosomal STR markers.

Authors:  Pankaj Shrivastava; Toshi Jain; V B Trivedi
Journal:  Int J Legal Med       Date:  2016-02-04       Impact factor: 2.686

3.  Polymorphism at 15 short tandem repeat AmpFlSTR Identifiler loci in three aboriginal populations of India: an assessment in human identification.

Authors:  Jheelam Banerjee; R Trivedi; V K Kashyap
Journal:  J Forensic Sci       Date:  2005-09       Impact factor: 1.832

4.  Genotypic polymorphisms at seventeen autosomal short tandem repeat loci in four tribal populations of Andhra Pradesh, India.

Authors:  G Hima Bindu; R Trivedi; V K Kashyap
Journal:  J Forensic Sci       Date:  2005-07       Impact factor: 1.832

5.  Genetic polymorphism at 15 tetrameric short tandem repeat loci in four aboriginal tribal populations of Bengal.

Authors:  Anamika Singh; R Trivedi; V K Kashyap
Journal:  J Forensic Sci       Date:  2006-01       Impact factor: 1.832

6.  POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with Windows interface.

Authors:  Naoko Takezaki; Masatoshi Nei; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2009-12-18       Impact factor: 16.240

7.  Genetic diversity of 15 autosomal short tandem repeats loci using the AmpFLSTR(®) Identifiler™ kit in a Bhil Tribe Population from Gujarat state, India.

Authors:  Ramesh R Chaudhari; M S Dahiya
Journal:  Indian J Hum Genet       Date:  2014-04

8.  Genetic polymorphism study at 15 autosomal locus in central Indian population.

Authors:  Pankaj Shrivastava; Toshi Jain; Veena Ben Trivedi
Journal:  Springerplus       Date:  2015-09-30
  8 in total
  1 in total

1.  Sequence variations, flanking region mutations, and allele frequency at 31 autosomal STRs in the central Indian population by next generation sequencing (NGS).

Authors:  Hirak Ranjan Dash; Kamlesh Kaitholia; R K Kumawat; Anil Kumar Singh; Pankaj Shrivastava; Gyaneshwer Chaubey; Surajit Das
Journal:  Sci Rep       Date:  2021-12-01       Impact factor: 4.379

  1 in total

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