Literature DB >> 32211755

Epidemiological and Clinical Predictors of COVID-19.

Yinxiaohe Sun1, Vanessa Koh2,3, Kalisvar Marimuthu2,3,4, Oon Tek Ng2,3,5, Barnaby Young2,3,5, Shawn Vasoo2,3, Monica Chan2,3, Vernon J M Lee1,6, Partha P De7, Timothy Barkham4,7, Raymond T P Lin4,8, Alex R Cook1, Yee Sin Leo1,2,3,4,5.   

Abstract

BACKGROUND: Rapid identification of COVID-19 cases, which is crucial to outbreak containment efforts, is challenging due to the lack of pathognomonic symptoms and in settings with limited capacity for specialized nucleic acid-based reverse transcription polymerase chain reaction (PCR) testing.
METHODS: This retrospective case-control study involves subjects (7-98 years) presenting at the designated national outbreak screening center and tertiary care hospital in Singapore for SARS-CoV-2 testing from 26 January to 16 February 2020. COVID-19 status was confirmed by PCR testing of sputum, nasopharyngeal swabs, or throat swabs. Demographic, clinical, laboratory, and exposure-risk variables ascertainable at presentation were analyzed to develop an algorithm for estimating the risk of COVID-19. Model development used Akaike's information criterion in a stepwise fashion to build logistic regression models, which were then translated into prediction scores. Performance was measured using receiver operating characteristic curves, adjusting for overconfidence using leave-one-out cross-validation.
RESULTS: The study population included 788 subjects, of whom 54 (6.9%) were SARS-CoV-2 positive and 734 (93.1%) were SARS-CoV-2 negative. The median age was 34 years, and 407 (51.7%) were female. Using leave-one-out cross-validation, all the models incorporating clinical tests (models 1, 2, and 3) performed well with areas under the receiver operating characteristic curve (AUCs) of 0.91, 0.88, and 0.88, respectively. In comparison, model 4 had an AUC of 0.65.
CONCLUSIONS: Rapidly ascertainable clinical and laboratory data could identify individuals at high risk of COVID-19 and enable prioritization of PCR testing and containment efforts. Basic laboratory test results were crucial to prediction models.
© The Author(s) 2020. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  COVID-19; SARS-CoV-2; prediction model; risk factors

Mesh:

Year:  2020        PMID: 32211755      PMCID: PMC7542554          DOI: 10.1093/cid/ciaa322

Source DB:  PubMed          Journal:  Clin Infect Dis        ISSN: 1058-4838            Impact factor:   9.079


On 31 December 2019, a cluster of atypical pneumonia cases was reported in Wuhan City, China [1]. The etiologic agent was subsequently identified as a novel coronavirus [2], severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) [3]. The disease, named coronavirus disease 2019 (COVID-19) [4], can progress to acute respiratory distress in severe cases [5]. The basic reproduction number of SARS-CoV-2 has been estimated to be 2.2 [6], and human-to-human transmission has since occurred to other parts of China and beyond, affecting 87 137 cases in 59 countries worldwide as of 1 March 2020 [6-10]. The clinical spectrum of COVID-19 is broad and the majority of infected individuals experience only a mild or subclinical illness, especially in the early phase of illness [11, 12]. Approximately 16% to 26% of hospitalized patients diagnosed with COVID-19 develop severe acute respiratory distress requiring oxygen supplementation and/or intensive care. Disease severity and mortality are associated with older age and underlying comorbidities such as diabetes, hypertension, and cardiovascular disease. In the absence of a vaccine or effective prophylaxis, the containment of SARS-CoV-2 is contingent on interrupting transmission through rapid identification and isolation of all infected individuals. Symptomatic contacts must be isolated early, while close contacts of cases who may be incubating infection need to be quarantined and monitored [13]. Currently, case identification relies on specialized nucleic acid–based reverse transcription polymerase chain reaction (PCR) testing, which is not readily available in resource-limited settings [14, 15]. Even in well-resourced settings the broad range of clinical presentation presents a challenge in deciding whom to test and could strain laboratory testing resources if criteria for testing are overly expansive. To allow for assessment of the probability of milder cases having COVID-19, we conducted risk factor analysis on a case-control cohort of 54 COVID-19 cases and 734 controls to determine the epidemiological and clinical risk factors that correlate with COVID-19, and to determine the accuracy of risk-scoring systems based on readily available clinical information.

METHODS

Study Design and Setting

This retrospective case-control study was conducted in Singapore at the National Centre for Infectious Diseases (NCID), a 330-bed infectious diseases treatment facility with the onsite National Public Health Laboratory, which develops certified testing protocols for emerging infectious diseases for the country [16]. This work was completed as part of outbreak operational evaluation and did not require institutional research board review. This study followed the Transparent Reporting of a Multivariable Prediction Model for Individual Prognosis or Diagnosis reporting guideline [17].

Study Population

Patients presenting to the NCID for SARS-CoV-2 testing between 26 January and 16 February 2020 were analyzed. Patients were either self-referred, referred from primary care facilities, or were at-risk cases identified by national contact tracing efforts (Supplementary Table 1). Cases were defined as individuals who had a positive SARS-CoV-2 PCR test and controls were defined as individuals for whom all SARS-CoV-2 PCR results were negative (Figure 1 and Supplementary Table 2).
Figure 1.

Study subject disposition. Abbreviations: NCID, National Centre for Infectious Diseases, Singapore; PCR, polymerase chain reaction; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2.

Study subject disposition. Abbreviations: NCID, National Centre for Infectious Diseases, Singapore; PCR, polymerase chain reaction; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2.

Data Collection

We collected the following data recorded at initial presentation for testing from the electronic medical records: demographic characteristics, medical comorbidities, exposure risk factors (including contact with a known COVID-19 case, contact with travellers from China, recent travel history, and visit to a hospital in China within 14 days prior to symptom onset), symptom days prior to presentation, vital signs at first clinical encounter (respiratory rate, blood pressure, temperature, and pulse rate), respiratory symptoms, gastrointestinal symptoms, physical examination finding of pneumonia, radiologic evidence of pneumonia, and blood investigation results (complete blood count, creatinine, sodium, and potassium).

Investigation for SARS-CoV-2

We collected respiratory specimens in the following order of preference: sputum or endotracheal aspirate, nasopharyngeal swab, and throat swab. For subjects with more than 1 specimen, the first and last specimens were collected at least 24 hours apart. High-risk patients were tested at least twice while low-risk patients were tested at least once according to a predefined algorithm [18]. SARS-CoV-2 tests were performed using one of the methods described in the Supplementary Methods.

Statistical Analyses

Study variables from the 4 abovementioned categories were analyzed for differences between SARS-CoV-2–positive and –negative subjects using Mann-Whitney-Wilcoxon test or Yates’ corrected chi-square test. All tests were 2-tailed, and P < .05 was considered to be statistically significant.

Development of Risk-Scoring Models

A preliminary filtering of variables was conducted by removing those without sufficient variability (<5 positive readings or scores) or with too many missing values (>80% missing). We also assessed variables for collinearity using variance inflation factor and correlation. We defined a lack of multicollinearity between predictors as a variance inflation factor of less than 2.5 or a correlation coefficient of less than 0.6. When 2 variables were found to be colinear, we selected variables for inclusion based on magnitude of effect and clinical relevance. Predictors of SARS-CoV-2–positive status were classified into 4 categories: exposure risk factors, demographic variables, clinical findings, and clinical test results. Two datasets were created: one comprising 788 subjects with complete reporting for demographic variables, exposure risk factors, clinical findings, and radiological tests (excluding other clinical tests such as blood tests); the other comprising a subset of 292 subjects with complete reporting for demographic variables, exposure risk factors, clinical findings, and all clinical tests (Figure 1). Four prediction models were developed based on these 2 overlapping datasets: model 1 included covariates from all 4 categories; model 2 included demographic variables, clinical findings, and clinical test results; model 3 included demographic variables, clinical findings, and clinical test results (excluding radiology); and model 4 included only demographic variables and clinical findings. Model 4 was built using all 788 subjects (54 cases and 734 controls). Of these 788 subjects, a complete blood count was not performed for 481; testing for creatinine, sodium, and potassium was not performed for 13; and 2 subjects had incomplete creatinine, sodium, and potassium test results. The dataset for models 1, 2, and 3, which included laboratory blood tests, comprised a subset of 292 subjects (49 cases and 243 controls) (Figure 1). The variables for our final models were selected through stepwise use of Akaike’s information criterion to build multivariate logistic regression models, which were then translated into prediction scores.

Evaluation of Risk-Scoring Models

The predictive performance of our final models in determining whether a patient is positive for SARS-CoV-2 was assessed using receiver operating characteristic (ROC) curves and the corresponding area under the ROC (AUC) values with confidence intervals (CIs) for the specificity at a given sensitivity derived using bootstrapping. We performed leave-out-one cross-validation to obtain corrected estimates of sensitivity, specificity, and AUCs of the risk-scoring models. Specifically, each individual was withheld in turn, the model refit to the remaining individuals, and then used to estimate the withheld patient’s risk of COVID-19. This provides a good estimate of the out-of-sample performance of each model. An AUC of 1.00 corresponds to perfect discrimination, whereas an AUC of 0.50 corresponds to no discriminating ability.

RESULTS

A total of 991 patients were referred to the NCID for SARS-CoV-2 testing between 26 January and 16 February 2020. We excluded 193 patients whose SARS-CoV-2 results were not yet available, 3 patients whose electronic medical records were not yet available, and 7 patients with unavailable vital sign records. Of the 788 patients included in the analysis, 54 were COVID-19 cases and 734 were controls (Figure 1). The median age was 34 years (range, 7–98 years; interquartile range [IQR], 27–45 years). The majority were female (407, 51.7%) and Singapore citizens (414, 52.5%). Of the 54 cases, the median age was 42 years (range, 16–79 years; IQR, 34–54 years), 29 (53.7%) were male and 48 (88.9%) were ethnic Chinese. Singapore citizens and Chinese nationals comprised 34 (63%) and 13 (24.1%) cases, respectively. In the control group, the median age was 34 years (range, 7–98 years; IQR, 27–43 years), 351 (47.9%) were male, and 553 (75.3%) were ethnic Chinese. Singapore citizens and Chinese nationals comprised 379 (51.7%) and 132 (18.0%) cases, respectively (Table 1).
Table 1.

Baseline Characteristics of SARS-CoV-2–Positive and SARS-CoV-2–Negative Subjects

CharacteristicsAll (N = 788)Cases (n = 54)Controls (n = 734) P a
Demographics
Age, median, years344234<.001
Gender
 Male380 (48.7)29 (53.7)351 (47.9).488
Female407 (51.7)25 (46.3)382 (52.1)
Ethnicity
 Chinese 601 (76.3)48 (88.9)553 (75.3).045
Malay 59 (7.5)1 (1.9)58 (7.9)
Indian 69 (8.8)5 (9.3)64 (8.7)
Others59 (7.5)059 (8.0)
Nationality
 Singaporean414 (52.5)34 (63.0)380 (51.8).027
Chinese 145 (18.4)13 (24.1)132 (18.0)
Malaysian79 (10.0)079 (10.8)
Others150 (19.1)7 (13)143 (19.5)
Comorbidities
 Any75 (9.5)5 (9.3)70 (9.5)1.000
 Obstructive pulmonary disease10 (1.3)010 (1.4).815
 Congestive heart failure1 (0.1)0 1 (0.1)1.000
 Connective tissue disease4 (0.5)0 4 (0.5)1.000
 Cerebrovascular disease7 (0.9)07 (1.0)1.000
 Dementia4 (0.5)04 (0.5)1.000
 Myocardial infarction9 (1.1)09 (1.2).877
 Leukemia1 (0.1)01 (0.1)1.000
 Solid tumor14 (1.8)014 (1.9).624
 Chronic kidney disease8 (1.0)08 (1.1).946
Diabetes mellitus54 (6.9)5 (9.3)49 (6.7).655
Chronic liver disease3 (0.4)03 (0.4)1.000
Exposure risk factors
Healthcare worker79 (10.0)079 (10.8).021
Contact with
 A known COVID-19 case158 (20.1)32 (59.3)126 (17.2)<.001
  A traveller from China (from 1 December 2019)174 (22.1)11 (20.4)163 (22.2).885
  A group of travellers from China (from 1 December 2019)84 (10.7)7 (13)77 (10.5).734
History of travel (from 1 December 2019) to
 Wuhan, China57 (7.2)15 (27.8)42 (5.7)<.001
China (including Wuhan)236 (30.0)17 (31.5)219 (29.8).920
Other countries (other than China) 216 (27.4)18 (33.3)198 (27).394
Visited any hospital in China recently (14 days since onset of symptoms)6 (0.8)06 (0.8)1.000
Clinical signs and symptoms
Number of subjects with >5 days of symptoms (n = 758)b252 (33.2)20 (38.5)232 (32.9).38
Body temperature, median, ºC37.137.537.1.003
Heart rate, median, beats per minute898789.379
Respiration rate, median, breaths per minute 181818.159
Systolic blood pressure, median, mmHg131131131.502
Diastolic blood pressure, median, mmHg787878.596
Cough564 (71.5)36 (66.7)528 (71.9).502
Sputum production212 (26.9)13 (24.1)199 (27.1).744
Shortness of breath100 (12.7)7 (13)93 (12.7)1.000
Rhinnorhea or nasal congestion238 (30.2)12 (22.2)226 (30.8).242
Sore throat350 (44.4)18 (33.3)332 (45.2).120
Auscultation finding of pneumonia (eg, crackles)42 (5.3)6 (11.1)36 (4.9).100
Respiratory symptoms (other than those listed above)45 (5.7)2 (3.7)43 (5.9).723
Gastrointestinal symptoms258 (32.8)20 (37)238 (32.4).585
Clinical tests
CXR/CT suggestive of pneumonia (n = 788)104 (13.2)23 (42.6)81 (11.1)<.001
Complete blood count (n = 307)c
 White blood cells, median, ×109/L7.14.77.8<.001
Hemoglobin, median, g/dL13.513.913.4.102
Platelets, median, ×109/L242205249<.001
Neutrophils, median, ×109/L4.42.54.9<.001
Lymphocytes, median, ×109/L1.61.21.7<.001
Eosinophils, median, ×109/L0.090.020.10<.001
Basophils, median, ×109/L0.030.020.04<.001
Renal panel (n = 294)d
 Creatine, median, µmol/L636462.977
Sodium, median, mmol/L141141141.600
Potassium, median, mmol/L3.63.53.6.156

Data are presented as n (%) unless otherwise indicated.

Abbreviations: COVID-19, coronavirus disease 2019; CT, chest computed tomography scan; CXR, chest X-ray; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2.

aThe Yates’ corrected χ 2 test and Mann-Whitney-Wilcoxon test were used to calculate P values for categorical and continuous variables, respectively.

bThere were a total of 758 subjects who were symptomatic on presentation (52 cases and 706 controls); 30 subjects were asymptomatic on presentation (2 cases and 28 controls).

cComplete blood count was performed for 307 subjects (out of 788), of whom 52 were cases (out of 54) and 255 were controls (out of 734).

dRenal panel results were obtained for 294 subjects (out of 788), of whom were 51 were cases (out of 54) and 243 were controls (out of 734).

Baseline Characteristics of SARS-CoV-2–Positive and SARS-CoV-2–Negative Subjects Data are presented as n (%) unless otherwise indicated. Abbreviations: COVID-19, coronavirus disease 2019; CT, chest computed tomography scan; CXR, chest X-ray; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2. aThe Yates’ corrected χ 2 test and Mann-Whitney-Wilcoxon test were used to calculate P values for categorical and continuous variables, respectively. bThere were a total of 758 subjects who were symptomatic on presentation (52 cases and 706 controls); 30 subjects were asymptomatic on presentation (2 cases and 28 controls). cComplete blood count was performed for 307 subjects (out of 788), of whom 52 were cases (out of 54) and 255 were controls (out of 734). dRenal panel results were obtained for 294 subjects (out of 788), of whom were 51 were cases (out of 54) and 243 were controls (out of 734). Positive cases were more likely to be older compared with controls (P < .001). Positive cases were not more likely to have any of the comorbidities documented than controls. In terms of exposure risk factors, positive cases were more likely to have contact with a known COVID-19 case (32 out of 54 cases [59.3%]; 126 out of 734 controls [17.2%]) or have recently travelled to Wuhan, China (15 out of 54 cases [27.8%]; 42 out of 734 controls [5.7%]). Positive cases were more likely to have an elevated body temperature (P = .003) at clinical presentation. Of clinical test results, positive cases were more likely to have radiological findings suggestive of pneumonia (23 out of 54 cases [42.6%]; 81 out of 734 controls [11.1%]) as well as lower blood counts of white blood cells, platelets, neutrophils, lymphocytes, eosinophils, and basophils (all P < .001) (Table 1).

Significant Predictors of a SARS-CoV-2–Positive Test

The final covariate risk estimates of each of the 4 multivariable models are detailed in Table 2. In model 1, exposure risk factors most predictive for COVID-19 were travel to Wuhan Province in China since 1 December 2019, around the time of the first outbreak in Wuhan [6] (model 1: adjusted odds ratio [AOR], 23.05; 95% CI, 3.29–268.08) and contact with a confirmed COVID-19 case in Singapore (model 1: AOR, 6.04; 95% CI, 1.54–27.61).
Table 2.

Final Covariates in the 4 Multivariate Models for COVID-19 Infection

VariableModel 1Model 2Model 3Model 4
AOR (95% CI) P AOR (95% CI) P AOR (95% CI) P AOR (95% CI) P
Age1.03 (1.02–1.05)<.001
Male sex5.98 (1.23–36.05).0383.67 (1.03–14.12).0513.51 (.97–13.89).063
Contact with a COVID-19 case6.04 (1.54–27.61).013
Travel to Wuhan since 1 December 201923.05 (3.29–268.08).004
Travel to China (including Wuhan) since 1 December 20190.02 (0–.19).002
Temperature 4.81 (1.97–13.12).0012.55 (1.32–5.21).0072.43 (1.25–5.02).0112.27 (1.5–3.44)<.001
Heart rate0.95 (.91–1).0440.95 (.92–.99).010.96 (.92–.99).0290.97 (.95–.99).01
Respiration rate1.21 (.93–1.5).0791.29 (1.07–1.59).0051.3 (1.07–1.6).004
Systolic blood pressure0.97 (.95–.99).016
Diastolic blood pressure1.04 (.99–1.1).1031.04 (1–1.09).0611.05 (1–1.1).0441.03 (1–1.06).102
Sore throat0.35 (.1–1.06).0730.53 (.22–1.25).1490.63 (.34–1.14).132
Sputum production0.23 (.06–.78).0240.29 (.1–.72).0110.3 (.11–.79).019
Shortness of breath2.76 (.67–10.7).145
Gastrointestinal symptoms3.73 (1.23–12.45).0242.69 (1.08–6.89).0352.31 (.92–5.93).076
CXR/CT suggestive of pneumonia6.18 (1.68–25.75).0082.86 (1.09–7.69).033
Lymphocytes (per 1 × 109/L)0.56 (.25–1.12).117
Neutrophils (per 1 × 109/L)0.32 (.19–.49)<.0010.39 (.26–.54)<.0010.38 (.25–.53)<.001
Eosinophils (per 1 × 109/L)0.85 (.78–.91)<.0010.89 (.83–.94)<.0010.9 (.84–.96).002
Creatinine (per µmol/L)0.96 (.9–1).1110.96 (.91–1).0620.96 (.92–1).079
Sodium (per mmol/L)1.17 (.96–1.43).133

Abbreviations: AOR, adjusted odds ratio; CI, confidence interval; COVID-19, coronavirus disease 2019; CT, chest computed tomography scan; CXR, chest X-ray.

Final Covariates in the 4 Multivariate Models for COVID-19 Infection Abbreviations: AOR, adjusted odds ratio; CI, confidence interval; COVID-19, coronavirus disease 2019; CT, chest computed tomography scan; CXR, chest X-ray. The other 3 models exclude exposure risk factors. Clinically, elevated body temperature (model 1: AOR, 4.81; 95% CI, 1.97–13.12; model 2: AOR, 2.55; 95% CI, 1.32–5.21; model 3: AOR, 2.43; 95% CI, 1.25–5.02; model 4: AOR, 2.27; 95% CI, 1.5–3.44) was the strongest predictor across all 4 models, except for model 2 where gastrointestinal symptoms fared slightly better (model 2: AOR, 2.69; 95% CI, 1.08–6.89). Gastrointestinal symptoms were also selected in model 1 and model 3 (model 1: AOR, 3.73; 95% CI, 1.23–12.45; model 3: AOR, 2.31; 95% CI, .92–5.93). Elevated respiratory rate (model 1: AOR, 1.21; 95% CI, .93–1.5; model 2: AOR, 1.29; 95% CI, 1.07–1.59; model 3: AOR, 1.3; 95% CI, 1.07–1.6) and absence of symptoms such as sore throat (model 1: AOR, .35; 95% CI, .1–1.06; model 3: AOR, .53; 95% CI, .22–1.25; model 4: AOR, .63; 95% CI, .34–1.14) and sputum production (model 1: AOR, .23; 95% CI, .06–.78; model 2: AOR, .29; 95% CI, .1–.72; model 3: AOR, .3; 95% CI, .11–.79) were strong predictors in the models in which they were selected. In terms of clinical test results, radiologic evidence of pneumonia (model 1: AOR, 6.18; 95% CI, 1.68–25.75) was the overall strongest predictor in model 1 and also contributed significantly to model 2 (model 1: AOR, 2.86; 95% CI, 1.09–7.69). Radiology results were excluded in models 3 and 4. Interestingly, blood parameters were found to contribute significantly to the predictive value of all the models in which they were selected (models 1, 2, and 3). The white blood count subsets most closely correlated with risk were lower neutrophil (model 1: AOR, .32 per 1 × 109/L; 95% CI, .19–.49; model 2: AOR, .39 per 1 × 109/L; 95% CI, .26–.54; model 3: AOR, .38 per 1 × 109/L; 95% CI, .25–.53) and eosinophil (model 1: AOR, .85 per 1 × 109/L; 95% CI, .78–.91); model 2: AOR, .89 per 1 × 109/L; 95% CI, .83–.94; model 3: AOR, .9 per 1 × 109/L; 95% CI, .84–.96) counts.

Model Performance of the Prediction Models

Models 1, 2, 3, and 4 differentiated between patients who did and did not have COVID-19 with optimism bias-corrected performance AUCs of 0.91 (95% CI, .86–.96), 0.88 (95% CI, .83–.93), 0.88 (95% CI, .83–.93), and 0.65 (95% CI, .57–.73), respectively (Figure 2). All models incorporating clinical test results had comparable AUCs (≥0.88). Additionally, comparing model 2 with model 3, the exclusion of chest radiology did not result in an appreciable decrease in AUC.
Figure 2.

Performance of models 1, 2, 3, and 4 measured using receiver operating characteristic curves, adjusting for overconfidence using leave-one-out cross-validation. Abbreviation: AUC, area under the receiver operating characteristic curve.

Performance of models 1, 2, 3, and 4 measured using receiver operating characteristic curves, adjusting for overconfidence using leave-one-out cross-validation. Abbreviation: AUC, area under the receiver operating characteristic curve.

DISCUSSION

Although the epidemiological and clinical characteristics of patients with COVID-19 are well described [19, 20], it is challenging for healthcare workers in the primary care or emergency room setting to determine individuals who are more likely to have COVID-19 for isolation and testing. Model 1, incorporating all easily ascertainable data at presentation for SARS-CoV-2 testing, performed exceptionally well with an AUC of 0.91. Additionally, the performance of model 2 suggests that, even in the absence of exposure risk factors, clinical findings and tests can identify subjects at high risk of COVID-19. Furthermore, exclusion of radiologic evidence of pneumonia (model 3) did not significantly impact model performance. However, when basic blood test results such as complete blood count were excluded (model 4), predictive accuracy was reduced substantially. The contact risk factors and clinical findings associated with a positive SARS-CoV-2 test are consistent with the known epidemiology and clinical features of COVID-19. Clinical findings strongly associated with a positive SARS-CoV-2 in our sample were higher temperature, higher respiratory rate, gastrointestinal symptoms, and decreased sputum production. Our results corroborate with a recent analysis [11] incorporating 1099 cases throughout China that found fever (87.9%) and nonproductive cough (67.7%) to be the dominant symptoms. Diarrhea (3.7%), although also reported, was less common. In another study involving 138 SARS-CoV-2–positive inpatients from a hospital in Wuhan, a large proportion of patients presented with fever (98.6%) and dry cough (59.4%). Diarrhea (10.1%) was also reported [12]. Our findings suggest a strong association of reduced white blood cell count with diagnosis of COVID-19. In the above study of 1099 cases, leukopenia was observed in 33.7% of patients on admission and was more prominent in severe cases [11]. The rapid global dissemination of COVID-19, which has significant morbidity with no proven treatment or vaccine, presents a major concern for resource-limited settings with minimal or no access to PCR testing. For well-resourced settings, COVID-19 presents a challenge for healthcare resources to cope with the large numbers of at-risk individuals in need of precautionary (often inpatient) isolation and rapid testing. A risk-scoring system would help prioritize high-risk individuals in primary care and emergency room settings for clinical care, isolation precautions, and contact-tracing efforts. Most risk-scoring systems for infectious pathogens include exposure risk variables, which are sensitive to the local epidemiologic context and phase of the global outbreak. Our current pilot analysis suggests that it is feasible to derive risk-scoring systems for COVID-19 diagnosis, which are reliant mainly on clinical findings and simple test results and hence robust to changes in transmission risk factors. The current proposed model is based on a limited dataset and additional validation in larger datasets and across different contexts would increase confidence in its performance and implementation. A trade-off between sensitivity and specificity will also need to be considered—a higher sensitivity will result in larger numbers of individuals needing to be isolated and tested, while a higher specificity will exclude some COVID-19 cases.

Conclusions

Prediction models that include rapidly ascertainable clinical findings and clinical tests, especially basic blood tests, have sufficient predictive value to identify individuals with a higher probability for COVID-19 and should be considered to stratify at-risk populations for laboratory testing (where available), isolation, and contact-tracing measures.

Supplementary Data

Supplementary materials are available at Clinical Infectious Diseases online. Consisting of data provided by the authors to benefit the reader, the posted materials are not copyedited and are the sole responsibility of the authors, so questions or comments should be addressed to the corresponding author. Click here for additional data file.
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7.  Importation and Human-to-Human Transmission of a Novel Coronavirus in Vietnam.

Authors:  Lan T Phan; Thuong V Nguyen; Quang C Luong; Thinh V Nguyen; Hieu T Nguyen; Hung Q Le; Thuc T Nguyen; Thang M Cao; Quang D Pham
Journal:  N Engl J Med       Date:  2020-01-28       Impact factor: 91.245

8.  Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study.

Authors:  Nanshan Chen; Min Zhou; Xuan Dong; Jieming Qu; Fengyun Gong; Yang Han; Yang Qiu; Jingli Wang; Ying Liu; Yuan Wei; Jia'an Xia; Ting Yu; Xinxin Zhang; Li Zhang
Journal:  Lancet       Date:  2020-01-30       Impact factor: 79.321

9.  A Novel Coronavirus from Patients with Pneumonia in China, 2019.

Authors:  Na Zhu; Dingyu Zhang; Wenling Wang; Xingwang Li; Bo Yang; Jingdong Song; Xiang Zhao; Baoying Huang; Weifeng Shi; Roujian Lu; Peihua Niu; Faxian Zhan; Xuejun Ma; Dayan Wang; Wenbo Xu; Guizhen Wu; George F Gao; Wenjie Tan
Journal:  N Engl J Med       Date:  2020-01-24       Impact factor: 91.245

10.  Characteristics of and Important Lessons From the Coronavirus Disease 2019 (COVID-19) Outbreak in China: Summary of a Report of 72 314 Cases From the Chinese Center for Disease Control and Prevention.

Authors:  Zunyou Wu; Jennifer M McGoogan
Journal:  JAMA       Date:  2020-04-07       Impact factor: 56.272

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  81 in total

1.  Application of a Serial Antigen-Based Testing Strategy for Severe Acute Respiratory Syndrome Coronavirus 2 and Student Adherence in a University Setting: Wisconsin, October-November 2020.

Authors:  John Paul Bigouette; Laura Ford; Ian Pray; Kimberly Langolf; Juliana Kahrs; Tara Zochert; Jacqueline E Tate; Douglas Gieryn; Hannah L Kirking; Ryan Westergaard; Marie E Killerby
Journal:  Open Forum Infect Dis       Date:  2021-09-18       Impact factor: 3.835

2.  Prediction of hospital-onset COVID-19 infections using dynamic networks of patient contact: an international retrospective cohort study.

Authors:  Ashleigh Myall; James R Price; Robert L Peach; Mohamed Abbas; Sid Mookerjee; Nina Zhu; Isa Ahmad; Damien Ming; Farzan Ramzan; Daniel Teixeira; Christophe Graf; Andrea Y Weiße; Stephan Harbarth; Alison Holmes; Mauricio Barahona
Journal:  Lancet Digit Health       Date:  2022-08

Review 3.  Signs and symptoms to determine if a patient presenting in primary care or hospital outpatient settings has COVID-19.

Authors:  Thomas Struyf; Jonathan J Deeks; Jacqueline Dinnes; Yemisi Takwoingi; Clare Davenport; Mariska Mg Leeflang; René Spijker; Lotty Hooft; Devy Emperador; Julie Domen; Anouk Tans; Stéphanie Janssens; Dakshitha Wickramasinghe; Viktor Lannoy; Sebastiaan R A Horn; Ann Van den Bruel
Journal:  Cochrane Database Syst Rev       Date:  2022-05-20

4.  Willingness to receive SARS-CoV-2 vaccine among healthcare workers in public institutions of Zhejiang Province, China.

Authors:  Jing Wang; Yaling Feng; Zhigang Hou; Yuzhong Lu; Huihong Chen; Le Ouyang; Nini Wang; Haiping Fu; Shuangqing Wang; Xuwei Kan; Yan Liao; Guofei Lu; Jilai Mao; Junfen Lin; Mengna Wu
Journal:  Hum Vaccin Immunother       Date:  2021-04-13       Impact factor: 3.452

5.  ENE-COVID nationwide serosurvey served to characterize asymptomatic infections and to develop a symptom-based risk score to predict COVID-19.

Authors:  Beatriz Pérez-Gómez; Roberto Pastor-Barriuso; Mayte Pérez-Olmeda; Miguel A Hernán; Jesús Oteo-Iglesias; Nerea Fernández de Larrea; Aurora Fernández-García; Mariano Martín; Pablo Fernández-Navarro; Israel Cruz; Jose L Sanmartín; Jose León Paniagua; Juan F Muñoz-Montalvo; Faustino Blanco; Raquel Yotti; Marina Pollán
Journal:  J Clin Epidemiol       Date:  2021-06-11       Impact factor: 6.437

Review 6.  Diagnosis of COVID-19 in children guided by lack of fever and exposure to SARS-CoV-2.

Authors:  Marco Roversi; Umberto Raucci; Giuseppe Pontrelli; Stefania Ranno; Michela Ambrosi; Antonio Torelli; Mara Pisani; Luana Coltella; Livia Piccioni; Luna Colagrossi; Marilena Agosta; Barbara Scialanga; Antonino Reale; Carlo Federico Perno; Paolo Rossi; Alberto Villani
Journal:  Pediatr Res       Date:  2021-06-11       Impact factor: 3.953

7.  Predictors of COVID-19 in an outpatient fever clinic.

Authors:  Frank Trübner; Lisa Steigert; Fabian Echterdiek; Norma Jung; Kirsten Schmidt-Hellerau; Wolfram G Zoller; Julia-Stefanie Frick; You-Shan Feng; Gregor Paul
Journal:  PLoS One       Date:  2021-07-21       Impact factor: 3.240

8.  Immunoinformatics approach for multi-epitope vaccine design against structural proteins and ORF1a polyprotein of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2).

Authors:  Khalid Mohamed Adam
Journal:  Trop Dis Travel Med Vaccines       Date:  2021-07-08

9.  Utility Of An Emergency Department Clinical Protocol For Early Identification of Coronavirus Infection.

Authors:  William Bonadio; Kaedrea Jackson; Lindsey Gottlieb; Eric Legome
Journal:  West J Emerg Med       Date:  2021-04-05

10.  Differential alterations in peripheral lymphocyte subsets in COVID-19 patients: upregulation of double-positive and double-negative T cells.

Authors:  Asmaa M Zahran; Zeinab Albadry M Zahran; Yasmeen H Mady; Essam Eldeen M O Mahran; Alaa Rashad; Ahmed Makboul; Khalid A Nasif; Aida A Abdelmaksoud; Omnia El-Badawy
Journal:  Multidiscip Respir Med       Date:  2021-06-10
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