| Literature DB >> 32211755 |
Yinxiaohe Sun1, Vanessa Koh2,3, Kalisvar Marimuthu2,3,4, Oon Tek Ng2,3,5, Barnaby Young2,3,5, Shawn Vasoo2,3, Monica Chan2,3, Vernon J M Lee1,6, Partha P De7, Timothy Barkham4,7, Raymond T P Lin4,8, Alex R Cook1, Yee Sin Leo1,2,3,4,5.
Abstract
BACKGROUND: Rapid identification of COVID-19 cases, which is crucial to outbreak containment efforts, is challenging due to the lack of pathognomonic symptoms and in settings with limited capacity for specialized nucleic acid-based reverse transcription polymerase chain reaction (PCR) testing.Entities:
Keywords: COVID-19; SARS-CoV-2; prediction model; risk factors
Mesh:
Year: 2020 PMID: 32211755 PMCID: PMC7542554 DOI: 10.1093/cid/ciaa322
Source DB: PubMed Journal: Clin Infect Dis ISSN: 1058-4838 Impact factor: 9.079
Figure 1.Study subject disposition. Abbreviations: NCID, National Centre for Infectious Diseases, Singapore; PCR, polymerase chain reaction; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2.
Baseline Characteristics of SARS-CoV-2–Positive and SARS-CoV-2–Negative Subjects
| Characteristics | All (N = 788) | Cases (n = 54) | Controls (n = 734) |
|
|---|---|---|---|---|
| Demographics | ||||
|
| 34 | 42 | 34 | <.001 |
|
| ||||
|
| 380 (48.7) | 29 (53.7) | 351 (47.9) | .488 |
| | 407 (51.7) | 25 (46.3) | 382 (52.1) | |
|
| ||||
|
| 601 (76.3) | 48 (88.9) | 553 (75.3) | .045 |
| | 59 (7.5) | 1 (1.9) | 58 (7.9) | |
| | 69 (8.8) | 5 (9.3) | 64 (8.7) | |
| | 59 (7.5) | 0 | 59 (8.0) | |
|
| ||||
|
| 414 (52.5) | 34 (63.0) | 380 (51.8) | .027 |
| | 145 (18.4) | 13 (24.1) | 132 (18.0) | |
| | 79 (10.0) | 0 | 79 (10.8) | |
| | 150 (19.1) | 7 (13) | 143 (19.5) | |
|
| ||||
|
| 75 (9.5) | 5 (9.3) | 70 (9.5) | 1.000 |
|
| 10 (1.3) | 0 | 10 (1.4) | .815 |
|
| 1 (0.1) | 0 | 1 (0.1) | 1.000 |
|
| 4 (0.5) | 0 | 4 (0.5) | 1.000 |
|
| 7 (0.9) | 0 | 7 (1.0) | 1.000 |
|
| 4 (0.5) | 0 | 4 (0.5) | 1.000 |
|
| 9 (1.1) | 0 | 9 (1.2) | .877 |
|
| 1 (0.1) | 0 | 1 (0.1) | 1.000 |
|
| 14 (1.8) | 0 | 14 (1.9) | .624 |
|
| 8 (1.0) | 0 | 8 (1.1) | .946 |
| | 54 (6.9) | 5 (9.3) | 49 (6.7) | .655 |
| | 3 (0.4) | 0 | 3 (0.4) | 1.000 |
| Exposure risk factors | ||||
|
| 79 (10.0) | 0 | 79 (10.8) | .021 |
|
| ||||
|
| 158 (20.1) | 32 (59.3) | 126 (17.2) | <.001 |
|
| 174 (22.1) | 11 (20.4) | 163 (22.2) | .885 |
|
| 84 (10.7) | 7 (13) | 77 (10.5) | .734 |
|
| ||||
|
| 57 (7.2) | 15 (27.8) | 42 (5.7) | <.001 |
| | 236 (30.0) | 17 (31.5) | 219 (29.8) | .920 |
| | 216 (27.4) | 18 (33.3) | 198 (27) | .394 |
|
| 6 (0.8) | 0 | 6 (0.8) | 1.000 |
| Clinical signs and symptoms | ||||
|
| 252 (33.2) | 20 (38.5) | 232 (32.9) | .38 |
|
| 37.1 | 37.5 | 37.1 | .003 |
|
| 89 | 87 | 89 | .379 |
|
| 18 | 18 | 18 | .159 |
|
| 131 | 131 | 131 | .502 |
|
| 78 | 78 | 78 | .596 |
|
| 564 (71.5) | 36 (66.7) | 528 (71.9) | .502 |
|
| 212 (26.9) | 13 (24.1) | 199 (27.1) | .744 |
|
| 100 (12.7) | 7 (13) | 93 (12.7) | 1.000 |
|
| 238 (30.2) | 12 (22.2) | 226 (30.8) | .242 |
|
| 350 (44.4) | 18 (33.3) | 332 (45.2) | .120 |
|
| 42 (5.3) | 6 (11.1) | 36 (4.9) | .100 |
|
| 45 (5.7) | 2 (3.7) | 43 (5.9) | .723 |
|
| 258 (32.8) | 20 (37) | 238 (32.4) | .585 |
| Clinical tests | ||||
|
| 104 (13.2) | 23 (42.6) | 81 (11.1) | <.001 |
|
| ||||
|
| 7.1 | 4.7 | 7.8 | <.001 |
| | 13.5 | 13.9 | 13.4 | .102 |
| | 242 | 205 | 249 | <.001 |
| | 4.4 | 2.5 | 4.9 | <.001 |
| | 1.6 | 1.2 | 1.7 | <.001 |
| | 0.09 | 0.02 | 0.10 | <.001 |
| | 0.03 | 0.02 | 0.04 | <.001 |
|
| ||||
|
| 63 | 64 | 62 | .977 |
| | 141 | 141 | 141 | .600 |
| | 3.6 | 3.5 | 3.6 | .156 |
Data are presented as n (%) unless otherwise indicated.
Abbreviations: COVID-19, coronavirus disease 2019; CT, chest computed tomography scan; CXR, chest X-ray; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2.
aThe Yates’ corrected χ 2 test and Mann-Whitney-Wilcoxon test were used to calculate P values for categorical and continuous variables, respectively.
bThere were a total of 758 subjects who were symptomatic on presentation (52 cases and 706 controls); 30 subjects were asymptomatic on presentation (2 cases and 28 controls).
cComplete blood count was performed for 307 subjects (out of 788), of whom 52 were cases (out of 54) and 255 were controls (out of 734).
dRenal panel results were obtained for 294 subjects (out of 788), of whom were 51 were cases (out of 54) and 243 were controls (out of 734).
Final Covariates in the 4 Multivariate Models for COVID-19 Infection
| Variable | Model 1 | Model 2 | Model 3 | Model 4 | ||||
|---|---|---|---|---|---|---|---|---|
| AOR (95% CI) |
| AOR (95% CI) |
| AOR (95% CI) |
| AOR (95% CI) |
| |
| Age | … | … | 1.03 (1.02–1.05) | <.001 | ||||
| Male sex | 5.98 (1.23–36.05) | .038 | 3.67 (1.03–14.12) | .051 | 3.51 (.97–13.89) | .063 | … | |
| Contact with a COVID-19 case | 6.04 (1.54–27.61) | .013 | … | … | … | |||
| Travel to Wuhan since 1 December 2019 | 23.05 (3.29–268.08) | .004 | … | … | … | |||
| Travel to China (including Wuhan) since 1 December 2019 | 0.02 (0–.19) | .002 | … | … | … | |||
| Temperature | 4.81 (1.97–13.12) | .001 | 2.55 (1.32–5.21) | .007 | 2.43 (1.25–5.02) | .011 | 2.27 (1.5–3.44) | <.001 |
| Heart rate | 0.95 (.91–1) | .044 | 0.95 (.92–.99) | .01 | 0.96 (.92–.99) | .029 | 0.97 (.95–.99) | .01 |
| Respiration rate | 1.21 (.93–1.5) | .079 | 1.29 (1.07–1.59) | .005 | 1.3 (1.07–1.6) | .004 | … | |
| Systolic blood pressure | … | … | … | 0.97 (.95–.99) | .016 | |||
| Diastolic blood pressure | 1.04 (.99–1.1) | .103 | 1.04 (1–1.09) | .061 | 1.05 (1–1.1) | .044 | 1.03 (1–1.06) | .102 |
| Sore throat | 0.35 (.1–1.06) | .073 | … | 0.53 (.22–1.25) | .149 | 0.63 (.34–1.14) | .132 | |
| Sputum production | 0.23 (.06–.78) | .024 | 0.29 (.1–.72) | .011 | 0.3 (.11–.79) | .019 | … | |
| Shortness of breath | … | … | 2.76 (.67–10.7) | .145 | … | |||
| Gastrointestinal symptoms | 3.73 (1.23–12.45) | .024 | 2.69 (1.08–6.89) | .035 | 2.31 (.92–5.93) | .076 | … | |
| CXR/CT suggestive of pneumonia | 6.18 (1.68–25.75) | .008 | 2.86 (1.09–7.69) | .033 | … | … | ||
| Lymphocytes (per 1 × 109/L) | … | … | 0.56 (.25–1.12) | .117 | … | |||
| Neutrophils (per 1 × 109/L) | 0.32 (.19–.49) | <.001 | 0.39 (.26–.54) | <.001 | 0.38 (.25–.53) | <.001 | … | |
| Eosinophils (per 1 × 109/L) | 0.85 (.78–.91) | <.001 | 0.89 (.83–.94) | <.001 | 0.9 (.84–.96) | .002 | … | |
| Creatinine (per µmol/L) | 0.96 (.9–1) | .111 | 0.96 (.91–1) | .062 | 0.96 (.92–1) | .079 | … | |
| Sodium (per mmol/L) | 1.17 (.96–1.43) | .133 | … | … | … |
Abbreviations: AOR, adjusted odds ratio; CI, confidence interval; COVID-19, coronavirus disease 2019; CT, chest computed tomography scan; CXR, chest X-ray.
Figure 2.Performance of models 1, 2, 3, and 4 measured using receiver operating characteristic curves, adjusting for overconfidence using leave-one-out cross-validation. Abbreviation: AUC, area under the receiver operating characteristic curve.