Literature DB >> 32211750

The Quaternary evolutionary history of Bristol rock cress (Arabis scabra, Brassicaceae), a Mediterranean element with an outpost in the north-western Atlantic region.

Marcus A Koch1, Johanna Möbus1, Clara A Klöcker1, Stephanie Lippert1, Laura Ruppert1, Christiane Kiefer1.   

Abstract

BACKGROUND AND AIMS: Bristol rock cress is among the few plant species in the British Isles considered to have a Mediterranean-montane element. Spatiotemporal patterns of colonization of the British Isles since the last interglacial and after the Last Glacial Maximum (LGM) from mainland Europe are underexplored and have not yet included such floristic elements. Here we shed light on the evolutionary history of a relic and outpost metapopulation of Bristol rock cress in the south-western UK.
METHODS: Amplified fragment length polymorphisms (AFLPs) were used to identify distinct gene pools. Plastome assembly and respective phylogenetic analysis revealed the temporal context. Herbarium material was largely used to exemplify the value of collections to obtain a representative sampling covering the entire distribution range. KEY
RESULTS: The AFLPs recognized two distinct gene pools, with the Iberian Peninsula as the primary centre of genetic diversity and the origin of lineages expanding before and after the LGM towards mountain areas in France and Switzerland. No present-day lineages are older than 51 ky, which is in sharp contrast to the species stem group age of nearly 2 My, indicating severe extinction and bottlenecks throughout the Pleistocene. The British Isles were colonized after the LGM and feature high genetic diversity.
CONCLUSIONS: The short-lived perennial herb Arabis scabra, which is restricted to limestone, has expanded its distribution range after the LGM, following corridors within an open landscape, and may have reached the British Isles via the desiccated Celtic Sea at about 16 kya. This study may shed light on the origin of other rare and peculiar species co-occurring in limestone regions in the south-western British Isles.
© The Author(s) 2020. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  zzm321990 Arabis scabrazzm321990 ; AFLPs; Brassicaceae; British Isles; Quaternary; evolutionary history; internal transcribed spacer 1 and 2; plastome sequences

Mesh:

Year:  2020        PMID: 32211750      PMCID: PMC7304472          DOI: 10.1093/aob/mcaa053

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  53 in total

1.  Diversity hotspots of the laurel forest on Tenerife, Canary Islands: a phylogeographic study of Laurus and Ixanthus.

Authors:  Anja Betzin; Mike Thiv; Marcus A Koch
Journal:  Ann Bot       Date:  2016-07-06       Impact factor: 4.357

2.  Application of phylogenetic networks in evolutionary studies.

Authors:  Daniel H Huson; David Bryant
Journal:  Mol Biol Evol       Date:  2005-10-12       Impact factor: 16.240

3.  Colonizing the American continent: Systematics of the genus Arabis in North America (Brassicaceae).

Authors:  Marcus A Koch; Robert Karl; Christiane Kiefer; Ihsan A Al-Shehbaz
Journal:  Am J Bot       Date:  2010-05-21       Impact factor: 3.844

4.  Database Taxonomics as Key to Modern Plant Biology.

Authors:  Marcus A Koch; Dmitry A German; Markus Kiefer; Andreas Franzke
Journal:  Trends Plant Sci       Date:  2017-11-13       Impact factor: 18.313

5.  Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7.

Authors:  Andrew Rambaut; Alexei J Drummond; Dong Xie; Guy Baele; Marc A Suchard
Journal:  Syst Biol       Date:  2018-09-01       Impact factor: 15.683

6.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

7.  RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference.

Authors:  Alexey M Kozlov; Diego Darriba; Tomáš Flouri; Benoit Morel; Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2019-11-01       Impact factor: 6.937

8.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

9.  Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism.

Authors:  Polina Yu Novikova; Nora Hohmann; Viktoria Nizhynska; Takashi Tsuchimatsu; Jamshaid Ali; Graham Muir; Alessia Guggisberg; Tim Paape; Karl Schmid; Olga M Fedorenko; Svante Holm; Torbjörn Säll; Christian Schlötterer; Karol Marhold; Alex Widmer; Jun Sese; Kentaro K Shimizu; Detlef Weigel; Ute Krämer; Marcus A Koch; Magnus Nordborg
Journal:  Nat Genet       Date:  2016-07-18       Impact factor: 41.307

10.  An Arabidopsis introgression zone studied at high spatio-temporal resolution: interglacial and multiple genetic contact exemplified using whole nuclear and plastid genomes.

Authors:  Nora Hohmann; Marcus A Koch
Journal:  BMC Genomics       Date:  2017-10-23       Impact factor: 3.969

View more
  1 in total

1.  From Western Asia to the Mediterranean Basin: Diversification of the Widespread Euphorbia nicaeensis Alliance (Euphorbiaceae).

Authors:  Valentina Stojilkovič; Eliška Záveská; Božo Frajman
Journal:  Front Plant Sci       Date:  2022-06-23       Impact factor: 6.627

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.