Literature DB >> 32209672

Scale-invariant topology and bursty branching of evolutionary trees emerge from niche construction.

Chi Xue1,2,3, Zhiru Liu1,2,3, Nigel Goldenfeld4,2,3.   

Abstract

Phylogenetic trees describe both the evolutionary process and community diversity. Recent work has established that they exhibit scale-invariant topology, which quantifies the fact that their branching lies in between the two extreme cases of balanced binary trees and maximally unbalanced ones. In addition, the backbones of phylogenetic trees exhibit bursts of diversification on all timescales. Here, we present a simple, coarse-grained statistical model of niche construction coupled to speciation. Finite-size scaling analysis of the dynamics shows that the resultant phylogenetic tree topology is scale-invariant due to a singularity arising from large niche construction fluctuations that follow extinction events. The same model recapitulates the bursty pattern of diversification in time. These results show how dynamical scaling laws of phylogenetic trees on long timescales can reflect the indelible imprint of the interplay between ecological and evolutionary processes.

Keywords:  evolution; molecular phylogeny; niche construction; scaling laws

Year:  2020        PMID: 32209672      PMCID: PMC7149460          DOI: 10.1073/pnas.1915088117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  Evolutionary consequences of niche construction and their implications for ecology.

Authors:  K N Laland; F J Odling-Smee; M W Feldman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

2.  Size and form in efficient transportation networks.

Authors:  J R Banavar; A Maritan; A Rinaldo
Journal:  Nature       Date:  1999-05-13       Impact factor: 49.962

3.  Perspective: seven reasons (not) to neglect niche construction.

Authors:  Kevin N Laland; Kim Sterelny
Journal:  Evolution       Date:  2006-09       Impact factor: 3.694

4.  Renormalization group and singular perturbations: Multiple scales, boundary layers, and reductive perturbation theory.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1996-07

5.  Are critical phenomena relevant to large-scale evolution?

Authors:  R V Solé; J Bascompte
Journal:  Proc Biol Sci       Date:  1996-02-22       Impact factor: 5.349

6.  Framework for analyzing ecological trait-based models in multidimensional niche spaces.

Authors:  Tommaso Biancalani; Lee DeVille; Nigel Goldenfeld
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-05-07

7.  Anomalous scaling in an age-dependent branching model.

Authors:  Stephanie Keller-Schmidt; Murat Tuğrul; Víctor M Eguíluz; Emilio Hernández-García; Konstantin Klemm
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-02-02

8.  Why Gupta et al.'s critique of niche construction theory is off target.

Authors:  Marcus W Feldman; John Odling-Smee; Kevin N Laland
Journal:  J Genet       Date:  2017-07       Impact factor: 1.166

9.  The fractal geometry of evolution.

Authors:  B Burlando
Journal:  J Theor Biol       Date:  1993-07-21       Impact factor: 2.691

10.  An introduction to niche construction theory.

Authors:  Kevin Laland; Blake Matthews; Marcus W Feldman
Journal:  Evol Ecol       Date:  2016-02-03       Impact factor: 2.717

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  1 in total

1.  Human pathogenic RNA viruses establish noncompeting lineages by occupying independent niches.

Authors:  Pascal Mutz; Nash D Rochman; Yuri I Wolf; Guilhem Faure; Feng Zhang; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-31       Impact factor: 12.779

  1 in total

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