Literature DB >> 32209257

G-quadruplexes in mRNA: A key structure for biological function.

Takuto Kamura1, Yousuke Katsuda2, Yusuke Kitamura1, Toshihiro Ihara1.   

Abstract

The last several years have seen exciting advances in the understanding of the structure and function of higher-order structures of RNA. Expression levels of some specific genes were shown to be directly regulated by environmentally-responsive formation of certain secondary structures such as stem-loops and pseudoknots. Even among these noncanonical structures, RNA G-quadruplexes, which form on the regions of guanine-rich sequences in mRNA, are highly stable structures that are involved in a variety of biological processes. However, many questions regarding the biological significance of RNA G-quadruplexes remain unsettled, mainly because it is difficult to locate the structures in mRNA. This review focuses on emerging methods that locate RNA G-quadruplexes in mRNA by computational and biochemical techniques. In addition, recent reports on the biological functions of RNA G-quadruplexes are also covered to highlight their various roles in cells, such as in regulating mRNA processing and translation.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Biology; Non-canonical structure; RNA G-quadruplex

Year:  2020        PMID: 32209257     DOI: 10.1016/j.bbrc.2020.02.168

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  8 in total

1.  Regulation of autophagy by DNA G-quadruplexes.

Authors:  Pauline Lejault; Jose F Moruno-Manchon; Sree M Vemu; Pedram Honarpisheh; Liang Zhu; Nayun Kim; Akihiko Urayama; David Monchaud; Louise D McCullough; Andrey S Tsvetkov
Journal:  Autophagy       Date:  2020-06-10       Impact factor: 16.016

2.  Proximity Ligation Assay Detection of Protein-DNA Interactions-Is There a Link between Heme Oxygenase-1 and G-quadruplexes?

Authors:  Wojciech Krzeptowski; Patryk Chudy; Grzegorz Sokołowski; Monika Żukowska; Anna Kusienicka; Agnieszka Seretny; Agata Kalita; Alicja Czmoczek; Jakub Gubała; Sonia Baran; Damian Klóska; Mateusz Jeż; Jacek Stępniewski; Krzysztof Szade; Agata Szade; Anna Grochot-Przęczek; Alicja Józkowicz; Witold N Nowak
Journal:  Antioxidants (Basel)       Date:  2021-01-12

Review 3.  G-quadruplex-R-loop interactions and the mechanism of anticancer G-quadruplex binders.

Authors:  Giulia Miglietta; Marco Russo; Giovanni Capranico
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

4.  Identification and targeting of G-quadruplex structures in MALAT1 long non-coding RNA.

Authors:  Xi Mou; Shiau Wei Liew; Chun Kit Kwok
Journal:  Nucleic Acids Res       Date:  2022-01-11       Impact factor: 16.971

5.  R-Loop Tracker: Web Access-Based Tool for R-Loop Detection and Analysis in Genomic DNA Sequences.

Authors:  Václav Brázda; Jan Havlík; Jan Kolomazník; Oldřich Trenz; Jiří Šťastný
Journal:  Int J Mol Sci       Date:  2021-11-27       Impact factor: 5.923

6.  Engineered mRNA-expressed bispecific antibody prevent intestinal cancer via lipid nanoparticle delivery.

Authors:  Lipei Wu; Weiwei Wang; Jiale Tian; Chunrun Qi; Zhengxin Cai; Wenhui Yan; Shihai Xuan; Anquan Shang
Journal:  Bioengineered       Date:  2021-12       Impact factor: 3.269

7.  SARS-CoV-2 Nsp3 unique domain SUD interacts with guanine quadruplexes and G4-ligands inhibit this interaction.

Authors:  Marc Lavigne; Olivier Helynck; Pascal Rigolet; Rofia Boudria-Souilah; Mireille Nowakowski; Bruno Baron; Sébastien Brülé; Sylviane Hoos; Bertrand Raynal; Lionel Guittat; Claire Beauvineau; Stéphane Petres; Anton Granzhan; Jean Guillon; Geneviève Pratviel; Marie-Paule Teulade-Fichou; Patrick England; Jean-Louis Mergny; Hélène Munier-Lehmann
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

8.  G-Quadruplexes in the Archaea Domain.

Authors:  Václav Brázda; Yu Luo; Martin Bartas; Patrik Kaura; Otilia Porubiaková; Jiří Šťastný; Petr Pečinka; Daniela Verga; Violette Da Cunha; Tomio S Takahashi; Patrick Forterre; Hannu Myllykallio; Miroslav Fojta; Jean-Louis Mergny
Journal:  Biomolecules       Date:  2020-09-21
  8 in total

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