Literature DB >> 32208170

Methyl-Metabolite Depletion Elicits Adaptive Responses to Support Heterochromatin Stability and Epigenetic Persistence.

Spencer A Haws1, Deyang Yu2, Cunqi Ye3, Coral K Wille4, Long C Nguyen5, Kimberly A Krautkramer1, Jay L Tomasiewicz6, Shany E Yang7, Blake R Miller7, Wallace H Liu1, Kazuhiko Igarashi8, Rupa Sridharan9, Benjamin P Tu3, Vincent L Cryns10, Dudley W Lamming11, John M Denu12.   

Abstract

S-adenosylmethionine (SAM) is the methyl-donor substrate for DNA and histone methyltransferases that regulate epigenetic states and subsequent gene expression. This metabolism-epigenome link sensitizes chromatin methylation to altered SAM abundance, yet the mechanisms that allow organisms to adapt and protect epigenetic information during life-experienced fluctuations in SAM availability are unknown. We identified a robust response to SAM depletion that is highlighted by preferential cytoplasmic and nuclear mono-methylation of H3 Lys 9 (H3K9) at the expense of broad losses in histone di- and tri-methylation. Under SAM-depleted conditions, H3K9 mono-methylation preserves heterochromatin stability and supports global epigenetic persistence upon metabolic recovery. This unique chromatin response was robust across the mouse lifespan and correlated with improved metabolic health, supporting a significant role for epigenetic adaptation to SAM depletion in vivo. Together, these studies provide evidence for an adaptive response that enables epigenetic persistence to metabolic stress.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  SAM; aging; chromatin; epigenetics; histone; metabolism; methionine; methylation; persistence

Mesh:

Substances:

Year:  2020        PMID: 32208170      PMCID: PMC7191556          DOI: 10.1016/j.molcel.2020.03.004

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  73 in total

1.  Short-term methionine deprivation improves metabolic health via sexually dimorphic, mTORC1-independent mechanisms.

Authors:  Deyang Yu; Shany E Yang; Blake R Miller; Jaclyn A Wisinski; Dawn S Sherman; Jacqueline A Brinkman; Jay L Tomasiewicz; Nicole E Cummings; Michelle E Kimple; Vincent L Cryns; Dudley W Lamming
Journal:  FASEB J       Date:  2018-01-30       Impact factor: 5.191

2.  Step-wise methylation of histone H3K9 positions heterochromatin at the nuclear periphery.

Authors:  Benjamin D Towbin; Cristina González-Aguilera; Ragna Sack; Dimos Gaidatzis; Véronique Kalck; Peter Meister; Peter Askjaer; Susan M Gasser
Journal:  Cell       Date:  2012-08-31       Impact factor: 41.582

3.  Methionine adenosyltransferase II serves as a transcriptional corepressor of Maf oncoprotein.

Authors:  Yasutake Katoh; Tsuyoshi Ikura; Yutaka Hoshikawa; Satoshi Tashiro; Takashi Ito; Mineto Ohta; Yohei Kera; Tetsuo Noda; Kazuhiko Igarashi
Journal:  Mol Cell       Date:  2011-03-04       Impact factor: 17.970

4.  Chromatin remodeling in the aging genome of Drosophila.

Authors:  Jason G Wood; Sara Hillenmeyer; Charles Lawrence; Chengyi Chang; Suzanne Hosier; Will Lightfoot; Eric Mukherjee; Nan Jiang; Christoph Schorl; Alexander S Brodsky; Nicola Neretti; Stephen L Helfand
Journal:  Aging Cell       Date:  2010-10-21       Impact factor: 9.304

5.  Genomes of replicatively senescent cells undergo global epigenetic changes leading to gene silencing and activation of transposable elements.

Authors:  Marco De Cecco; Steven W Criscione; Edward J Peckham; Sara Hillenmeyer; Eliza A Hamm; Jayameenakshi Manivannan; Abigail L Peterson; Jill A Kreiling; Nicola Neretti; John M Sedivy
Journal:  Aging Cell       Date:  2013-01-30       Impact factor: 9.304

6.  Histone methyltransferase SETDB1 regulates liver cancer cell growth through methylation of p53.

Authors:  Qi Fei; Ke Shang; Jianhua Zhang; Shannon Chuai; Desheng Kong; Tianlun Zhou; Shijun Fu; Ying Liang; Chong Li; Zhi Chen; Yuan Zhao; Zhengtian Yu; Zheng Huang; Min Hu; Haiyan Ying; Zhui Chen; Yun Zhang; Feng Xing; Jidong Zhu; Haiyan Xu; Kehao Zhao; Chris Lu; Peter Atadja; Zhi-Xiong Xiao; En Li; Jianyong Shou
Journal:  Nat Commun       Date:  2015-10-16       Impact factor: 14.919

7.  Methionine metabolism is essential for SIRT1-regulated mouse embryonic stem cell maintenance and embryonic development.

Authors:  Shuang Tang; Yi Fang; Gang Huang; Xiaojiang Xu; Elizabeth Padilla-Banks; Wei Fan; Qing Xu; Sydney M Sanderson; Julie F Foley; Scotty Dowdy; Michael W McBurney; David C Fargo; Carmen J Williams; Jason W Locasale; Ziqiang Guan; Xiaoling Li
Journal:  EMBO J       Date:  2017-10-11       Impact factor: 14.012

8.  Methionine restriction restores a younger metabolic phenotype in adult mice with alterations in fibroblast growth factor 21.

Authors:  Emma K Lees; Elżbieta Król; Louise Grant; Kirsty Shearer; Cathy Wyse; Eleanor Moncur; Aleksandra S Bykowska; Nimesh Mody; Thomas W Gettys; Mirela Delibegovic
Journal:  Aging Cell       Date:  2014-06-17       Impact factor: 9.304

9.  SUV39H1/H3K9me3 attenuates sulforaphane-induced apoptotic signaling in PC3 prostate cancer cells.

Authors:  G W Watson; S Wickramasekara; Z Palomera-Sanchez; C Black; C S Maier; D E Williams; R H Dashwood; E Ho
Journal:  Oncogenesis       Date:  2014-12-08       Impact factor: 7.485

10.  SIRT6 represses LINE1 retrotransposons by ribosylating KAP1 but this repression fails with stress and age.

Authors:  Michael Van Meter; Mehr Kashyap; Sarallah Rezazadeh; Anthony J Geneva; Timothy D Morello; Andrei Seluanov; Vera Gorbunova
Journal:  Nat Commun       Date:  2014-09-23       Impact factor: 14.919

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  17 in total

Review 1.  The evolving metabolic landscape of chromatin biology and epigenetics.

Authors:  Ziwei Dai; Vijyendra Ramesh; Jason W Locasale
Journal:  Nat Rev Genet       Date:  2020-09-09       Impact factor: 53.242

Review 2.  Molecular mechanisms of dietary restriction promoting health and longevity.

Authors:  Cara L Green; Dudley W Lamming; Luigi Fontana
Journal:  Nat Rev Mol Cell Biol       Date:  2021-09-13       Impact factor: 94.444

3.  Histone Acid Extraction and High Throughput Mass Spectrometry to Profile Histone Modifications in Arabidopsis thaliana.

Authors:  Ray Scheid; James A Dowell; Dean Sanders; Jianjun Jiang; John M Denu; Xuehua Zhong
Journal:  Curr Protoc       Date:  2022-08

Review 4.  Targeting the methionine addiction of cancer.

Authors:  Joni C Sedillo; Vincent L Cryns
Journal:  Am J Cancer Res       Date:  2022-05-15       Impact factor: 5.942

Review 5.  PRC2, Chromatin Regulation, and Human Disease: Insights From Molecular Structure and Function.

Authors:  Xiuli Liu; Xin Liu
Journal:  Front Oncol       Date:  2022-06-21       Impact factor: 5.738

6.  The regulation of healthspan and lifespan by dietary amino acids.

Authors:  Reji Babygirija; Dudley W Lamming
Journal:  Transl Med Aging       Date:  2021-05-24

7.  Two methods for assessment of choline status in a randomized crossover study with varying dietary choline intake in people: isotope dilution MS of plasma and in vivo single-voxel magnetic resonance spectroscopy of liver.

Authors:  David A Horita; Sunil Hwang; Julie M Stegall; Walter B Friday; David R Kirchner; Steven H Zeisel
Journal:  Am J Clin Nutr       Date:  2021-06-01       Impact factor: 7.045

8.  The Bidirectional Relationship Between Cancer Epigenetics and Metabolism.

Authors:  Luke T Izzo; Hayley C Affronti; Kathryn E Wellen
Journal:  Annu Rev Cancer Biol       Date:  2020-11-30

9.  GATA factor-regulated solute carrier ensemble reveals a nucleoside transporter-dependent differentiation mechanism.

Authors:  Nicole M Zwifelhofer; Xiaoli Cai; Ruiqi Liao; Bin Mao; Daniel J Conn; Charu Mehta; Sunduz Keles; Yang Xia; Emery H Bresnick
Journal:  PLoS Genet       Date:  2020-12-28       Impact factor: 5.917

10.  The eroding chromatin landscape of aging stem cells.

Authors:  Changyou Shi; Lin Wang; Payel Sen
Journal:  Transl Med Aging       Date:  2020-08-17
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