Literature DB >> 32205900

Using Differential Evolution to Design Optimal Experiments.

Zack Stokes1, Abhyuday Mandal2, Weng Kee Wong3.   

Abstract

Differential Evolution (DE) has become one of the leading metaheuristics in the class of Evolutionary Algorithms, which consists of methods that operate off of survival-of-the-fittest principles. This general purpose optimization algorithm is viewed as an improvement over Genetic Algorithms, which are widely used to find solutions to chemometric problems. Using straightforward vector operations and random draws, DE can provide fast, efficient optimization of any real, vector-valued function. This article reviews the basic algorithm and a few of its modifications with various enhancements. We provide guidance for practitioners, discuss implementation issues and give illustrative applications of DE with the corresponding R codes to find different types of optimal designs for various statistical models in chemometrics that involve the Arrhenius equation, reaction rates, concentration measures and chemical mixtures.

Entities:  

Keywords:  D-optimality; Evolutionary Algorithms; Experimental Design; Mixture Experiments; Reaction Rates

Year:  2020        PMID: 32205900      PMCID: PMC7088454          DOI: 10.1016/j.chemolab.2020.103955

Source DB:  PubMed          Journal:  Chemometr Intell Lab Syst        ISSN: 0169-7439            Impact factor:   3.491


  9 in total

1.  Optimum design of experiments for enzyme inhibition kinetic models.

Authors:  Barbara Bogacka; Maciej Patan; Patrick J Johnson; Kuresh Youdim; Anthony C Atkinson
Journal:  J Biopharm Stat       Date:  2011-05       Impact factor: 1.051

2.  Standardized maximim D-optimal designs for enzyme kinetic inhibition models.

Authors:  Ping-Yang Chen; Ray-Bing Chen; Heng-Chin Tung; Weng Kee Wong
Journal:  Chemometr Intell Lab Syst       Date:  2017-09-06       Impact factor: 3.491

Review 3.  Mixture experiment methods in the development and optimization of microemulsion formulations.

Authors:  S Furlanetto; M Cirri; G Piepel; N Mennini; P Mura
Journal:  J Pharm Biomed Anal       Date:  2011-01-19       Impact factor: 3.935

4.  Generalized Ordinary Differential Equation Models.

Authors:  Hongyu Miao; Hulin Wu; Hongqi Xue
Journal:  J Am Stat Assoc       Date:  2014-10       Impact factor: 5.033

5.  Finding High-Dimensional D-Optimal Designs for Logistic Models via Differential Evolution.

Authors:  Weinan Xu; Weng Kee Wong; Kay Chen Tan; Jianxin Xu
Journal:  IEEE Access       Date:  2019-01-01       Impact factor: 3.367

6.  Correlated parameter fit of arrhenius model for thermal denaturation of proteins and cells.

Authors:  Zhenpeng Qin; Saravana Kumar Balasubramanian; Willem F Wolkers; John A Pearce; John C Bischof
Journal:  Ann Biomed Eng       Date:  2014-09-10       Impact factor: 3.934

7.  Ant system: optimization by a colony of cooperating agents.

Authors:  M Dorigo; V Maniezzo; A Colorni
Journal:  IEEE Trans Syst Man Cybern B Cybern       Date:  1996

Review 8.  A comprehensive review of swarm optimization algorithms.

Authors:  Mohd Nadhir Ab Wahab; Samia Nefti-Meziani; Adham Atyabi
Journal:  PLoS One       Date:  2015-05-18       Impact factor: 3.240

9.  An adaptive hybrid algorithm based on particle swarm optimization and differential evolution for global optimization.

Authors:  Xiaobing Yu; Jie Cao; Haiyan Shan; Li Zhu; Jun Guo
Journal:  ScientificWorldJournal       Date:  2014-02-09
  9 in total
  1 in total

Review 1.  Metaheuristics for pharmacometrics.

Authors:  Seongho Kim; Andrew C Hooker; Yu Shi; Grace Hyun J Kim; Weng Kee Wong
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2021-10-22
  1 in total

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