| Literature DB >> 32202070 |
Cheng-Ta Chou1,2, Bing-Wen Soong3,4, Kon-Ping Lin3,5, Yu-Shuen Tsai6, Kang-Yang Jih3,5, Yi-Chu Liao3,5,7, Yi-Chung Lee3,5,7.
Abstract
OBJECTIVES: To investigate the clinical, electrophysiological, neuroimaging characteristics and genetic features of SPG5 in Taiwan.Entities:
Mesh:
Substances:
Year: 2020 PMID: 32202070 PMCID: PMC7187706 DOI: 10.1002/acn3.51019
Source DB: PubMed Journal: Ann Clin Transl Neurol ISSN: 2328-9503 Impact factor: 4.511
Figure 1The CYP7B1 mutations identified in this study. (A) Sanger sequence traces of the four missense nonsense CYP7B1 mutations identified in our patient cohort. The mutations are labeled in red. (B) The CYP7B1 compound heterozygous mutations, c.[392_393insA];[392_393delA], which putatively result in p.[N131Kfs*3];[N131Ifs*4], are shown by sequencing TA‐subcloned PCR fragments. (C) Alignment of multiple CYP7B1 orthologues showing conservation of the Ala295 and Leu439 residues at least from human to reptile.
CYP7B1 mutations identified in this study.
| Mutations | Bioinformatics Prediction | Population Controls | ACMG‐AMP guideline | References | |||
|---|---|---|---|---|---|---|---|
| Nucleotide | Amino acid | Provean | CADD Score | Taiwan biobank | gnomAD | ||
| 334C> T | p.R112* | Deleterious | 24.7 |
0.003963 (12/3,028) |
0.0001469 (41/279,154) | Pathogenic |
|
|
c.392_392delA | p.N131Ifs*4 | NA | 15.69 | 0 | 0 | Pathogenic | This study |
| c.392_393insA | p.N131Kfs*3 | NA | 16.08 | 0 |
0.00001.994 (5/250,768) | Pathogenic |
|
| c.884C> T | p.A295V | Deleterious | 24.3 | 0 |
0.000003.987 (1/250,810) | Likely pathogenic | This study |
| c.1162C> T | p.R388* | Deleterious | 36 | 0 |
0.000007.071 (2/282,844) | Pathogenic |
|
| c.1316T> G | p.L439R | Deleterious | 20.8 | 0 | 0 | Likely pathogenic | This study |
CADD, Combined Annotation Dependent Depletion; gnomAD, Genome Aggregation Database; ACMG‐AMP, American College of Medical Genetics and Genomics and the Association for Molecular Pathology; NA, not applicable.
Allele frequency (minor allele count/total allele count).
Figure 2The CYP7B1 mutations identified in this study (labeled in red) and in the literature (labeled in black).
Clinical characteristics and CYP7B1 mutations of the 19 patients with SPG5.
| No. |
Age/ Sex |
| Onset age | Family history | SPRS |
Disability score (0‐7) |
Muscle Strength (hip flexors) | DTR |
Babi‐nski sign | Sensory impairment |
Dysmetria UL/LL |
Urinary symptoms | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Biceps | Knee | Ankle | Surface |
Position/ Vibration | |||||||||||
| A | 30/F | p.[R112*];[R112*] | 7 | No | 10 | 2 | 5 | ++ | +++ | ++++ | + | + | +/+ | −/− | − |
| B | 49/F | p.[R112*];[R112*] | 31 | No | 18 | 4 | 4 | +++ | +++ | ++++ | + | + | +/+ | −/+ | + |
| C | 33/M | p.[R112*];[R112*] | 13 | No | 9 | 2 | 5 | +++ | +++ | ++++ | − | + | +/+ | −/+ | + |
| D | 51/M | p.[R112*];[R112*] | 36 | No | 13 | 3 | 4 | ++ | +++ | ++++ | + | − | +/+ | −/+ | − |
| E | 44/F | p.[R112*];[R112*] | 40 | No | 23 | 3 | 4 | +++ | +++ | +++ | − | + | +/+ | −/+ | + |
| F | 19/F | p.[R112*];[R112*] | 11 | No | 7 | 2 | 5 | ++ | +++ | ++++ | + | − | −/− | −/− | − |
| G | 42/M | p.[R112*];[R112*] | 15 | No | 24 | 5 | 3 | ++ | +++ | ++++ | + | − | +/+ | −/+ | − |
| H | 46/F | p.[R112*];[R112*] | 36 | No | 13 | 3 | 4 | ++ | +++ | ++++ | + | − | +/+ | −/− | − |
| I | 45/M | p.[R112*];[R112*] | 16 | Yes | 16 | 3 | 4 | ++ | ++/ | ++++ | + | + | +/+ | −/+ | − |
| J | 34/F | p.[R112*];[R112*] | 15 | No | 11 | 1 | 5 | + | +++/++++ | ++++ | + | − | +/+ | −/− | − |
| K | 35/F | p.[R112*];[R112*] | 30 | No | NA | 7 | NA | ++ | +++ | NA | NA | NA | NA/NA | NA/NA | NA |
| L | 47/F | p.[R112*];[R112*] | 32 | No | NA | 4 | NA | NA | NA | NA | NA | NA | NA/NA | NA/NA | NA |
| M | 66/M | p.[R112*];[R112*] | 31 | No | NA | NA | NA | NA | NA | NA | + | NA | NA/NA | −/− | NA |
| N | 42/M | p.[R112*];[L439R] | 28 | No | 27 | 4 | 4 | − | +++ | +++ | + | + | +/+ | −/+ | + |
| O | 52/F | p.[R112*];[A295V] | 8 | No | 41 | 7 | 2 | ++ | ++++ | ++++ | + | + | +/+ | −/Can’t | − |
| P−1 | 40/F |
p.[N131Ifs*4]; [N131Kfs*3] | 10 | Yes | 40 | 5 | 3 | ++ | +++ | +++ | + | + | +/+ | +/+ | + |
| P‐2 | 39/M |
p.[N131Ifs*4]; [N131Kfs*3] | 25 | Yes | 41 | 5 | 4 | +++ | +++ | +++ | + | + | +/+ | +/+ | + |
| Q‐1 | 39/F | p.[R388*];[R388*] | 8 | Yes | NA | NA | NA | ++ | +++ | NA | NA | NA | NA/NA | −/− | + |
| Q‐2 | 36/M | p.[R388*];[R388*] | 12 | Yes | NA | NA | NA | + | +++ | NA | NA | − | NA/NA | NA/NA | − |
SPRS, Spastic Paraplegia Rating Scale; DTR, deep tendon reflex (+‐++++); UL, upper limbs; LL, lower limbs; NA, not available; +, presence of symptoms or abnormalities; −, negative for symptoms or abnormalities.
Disability score: see text.
Medical Research Council (MRC) Scale 0‐5.
MRI findings of the 15 patients with SPG5.
| Patient | Brain MRI | Cord antero‐posterior diameter (mm) | |
|---|---|---|---|
| C2 | T4 | ||
| A | WMH | 5.5 | 5.5 |
| B | WMH, no CA | 6.4 | 4.8 |
| C | WMH | 6.7 | 5.7 |
| D | NA | 6.7 | 5.6 |
| F | Normal, no CA | 8.4 | 5.3 |
| G | WMH, CA | 6.1 | NA |
| H | WMH, CA | 7.4 | 5.5 |
| I | NA | NA | 5.2 |
| J | Normal, no CA | 6.2 | 4.5 |
| N | WMH | NA | 4.5 |
| O | WMH | 7.1 | 5.2 |
| P‐1 | WMH, CA | 6.4 | 4.5 |
| P‐2 | WMH, CA | NA | NA |
| Q‐1 | WMH | 6.8 | 4.8 |
| Q‐2 | Normal | 6.7 | 5.5 |
| mean |
WMH (76.9%, 10/13) CA (57.1%, 4/7) | 6.7 ± 0.72 | 5.1 ± 0.45 |
| Control subjects ( | 7.5 ± 0.66 | 6.3 ± 0.45 | |
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CA, cerebellar atrophy; NA, not available; WMH, white matter T2‐hyperintensity in bilateral occipito‐parietal regions.
Comparing the diameters of the patients with those of the controls by t‐test.
Figure 3Representative neuroimages of the patients with SPG5. T2‐weighted images or fluid attenuation inversion recovery images of brain and spinal cord MRI from a 31‐year‐old female patient with p.[N131Kfs*3];[N131Ifs*4] mutation (lane A) and a 44‐year‐old female patient with homozygous p.R112* mutation (lane B) demonstrate white matter hyperintensity in bilateral occipito‐parietal regions (arrowhead), mild cerebellar atrophy (arrow), cervical and thoracic cord atrophy (T4 is labeled with asterisks), in comparison with normal control (lane C).
Figure 4(A) Linear regression of SPRS scores by disease durations in our cohort (n = 14, solid squares: homozygous CYP7B1 p.R112* mutation, solid circles: other genotypes) and data from Schӧls et al. (n = 31, hollow circles). There was a moderate correlation between the SPRS and disease duration with an estimated disease progression rate (SPRS points per year with the disease) of 0.55 points/year (R 2 = 0.341, P < 0.001). (B) The scatter plot of SRPS in the SPG5 patients with a homozygous CYP7B1 p.R112* mutation and those with other genotypes (including data from Schӧls et al ). The SPRS were significantly lower in patients with homozygous p.R112* mutation than those with other genotypes despite the two groups having similar disease durations.
Figure 5Haplotype analysis of 12 single nucleotide polymorphism (SNP) markers flanking the CYP7B1 gene in 13 pedigrees harboring the CYP7B1 p.R112* (c.334C> T) mutation. The squares and circles denote males and females, respectively. The filled symbols represent patients and open symbols designate unaffected members. Dotted symbols indicate asymptomatic carriers. A slash indicates deceased individuals. The mutated nucleotide is labeled in red and the linked haplotype is labeled with blue.