| Literature DB >> 32195086 |
Abdullah F U H Saeed1,2,3,4, Xinglin Ruan5, Hongxin Guan1,2, Jingqian Su1,2, Songying Ouyang1,2,3.
Abstract
Early detection of infectious nucleic acids released from invading pathogens by the innate immune system is critical for immune defense. Detection of these nucleic acids by host immune sensors and regulation of DNA sensing pathways have been significant interests in the past years. Here, current understandings of evolutionarily conserved DNA sensing cyclic GMP-AMP (cGAMP) synthase (cGAS) are highlighted. Precise activation and tight regulation of cGAS are vital in appropriate innate immune responses, senescence, tumorigenesis and immunotherapy, and autoimmunity. Hence, substantial insights into cytosolic DNA sensing and immunotherapy of indispensable cytosolic sensors have been detailed to extend limited knowledge available thus far. This Review offers a critical, in-depth understanding of cGAS regulation, cytosolic DNA sensing, and currently established therapeutic approaches of essential cytosolic immune agents for improved human health.Entities:
Keywords: cGAS‐STING; cytosolic sensing; immunotherapy; innate immune regulation; tumorigenesis
Year: 2020 PMID: 32195086 PMCID: PMC7080523 DOI: 10.1002/advs.201902599
Source DB: PubMed Journal: Adv Sci (Weinh) ISSN: 2198-3844 Impact factor: 16.806
Figure 1PRRs recognized PAMPs, evolutionarily conserved features derived from bacteria, fungi, parasites, and viruses, to avert pathogen invasion. PAMPs from invading microbes activate PRRs, including TLRs, RLRs, NLRs, and CLRs. Subsequently, PRRs trigger cGAS‐STING immune pathways, which lead to the induction of IFNs and pro‐inflammatory cytokines. PRRs: pattern‐recognition receptors; RLRs: RIG‐I‐like receptors; NLRs: nucleotide oligomerization and binding domain (NOD)‐like receptors; ALRs: AIM2‐like receptors; CLRs: C‐type lectin‐like receptors; PAMPs: pathogen‐associated molecular patterns.
Figure 2Cytosolic nucleic acid sensors and recognition of innate immune pathways. Nucleic acids (i.e., ssRNA, dsRNA, and DNA) presented by viruses, bacteria, and impaired host cells are leaked and recognized by DNA sensors in the cytosol. During infection, foreign nucleic acids are recognized by RLRs, non‐RLRs, and cGAS, which lead to the induction of IFNs by adaptor proteins MAVS and STING, and transcription factors NF‐κB, IRF1, IRF3, IRF5, and IRF7. Pol III, polymerase III; LGP2, laboratory of genetics and physiology 2; RIG‐I, retinoic acid‐inducible gene I; MDA5, melanoma differentiation‐associated protein 5; IFIT, IFN‐induced protein with tetratricopeptide repeats; NOD2, nucleotide‐binding oligomerization domain 2; PKR, protein kinase R; AIM2, absent in melanoma 2; DNA‐PK, DNA‐dependent protein kinase; cGAS, cyclic GMP‐AMP synthase; ZBPI/DAI, Z‐DNA binding protein 1/DNA‐dependent activator of IFN regulatory factors; IFI16, IFN‐gamma inducible protein 16; MRE11, meiotic recombination 11 homolog A; Lsm14A, LSM14A mRNA processing body assembly factor; Ku70/80, Ku heterodimer; LRRFIP1, LRR binding FLII interacting protein 1; DDX41, DExD/H‐box helicase.
Figure 3cGAS activation structure and orientation in cGAS‐DNA dimer complex. A) cGAS exists in the apo form in auto‐inhibited conformation (PDB code 4KB6), and detailed observation of the “zinc‐thumb.” Binding to the sugar‐phosphate spine of DNA results in the exposure of cGAS‐DNA composites and cGAS‐active catalytic sites by structural rearrangements for nucleotide binding and catalysis. DNA minor groove is the target drug delivery site employed for therapeutics. B) Ribbon representation of the side views of the cGAS model with marked domains and structures. (cyan α‐helices, green β‐strands; PDB code 4JLX). C) cGAS dimers engage DNA along with zinc (Zn2+)‐thumb dimerization elements (PDB code 5N6I). The interchanging “head‐to‐head” or “tail‐to‐tail” assemblage leads to ladder‐like cGAS association over quasi‐continuous DNA in the crystal lattice.
Regulation of cGAS‐mediated innate immune responses by posttranslational modifications
| Regulatory mechanism | Regulatory function | Regulatory effect | Prospective problem | Reference | |
|---|---|---|---|---|---|
| Post‐translational modification (PTM) | Phosphorylation | Akt protein phosphorylation at Ser305 or Ser291 sites of cGAS inhibits its catalytic activity | Impaired cGAMP synthesis, and IFNs | How to reverse the inhibition of cGAS‐mediated signaling by phosphatase? |
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| cGAS is phosphorylated at Ser305 | Inhibits cGAMP‐synthesis | The activity of cGAS in anti‐tumor immunity remains poorly understood |
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| Ubiquitination | TRIM56 triggers the cGAS‐Lys335 monoubiquitination | Improves dimerization of cGAS, DNA‐binding action, and cGAMP synthesis | In what way TRIM56‐mediated monoubiquitination upsets cGAS dimerization and DNA‐binding activity? |
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| E3 ligase RNF185 catalyzes the ubiquitination of cGAS | Enhance production of IFNs | By what means K27‐linked ubiquitination of cGAS and enzymatic response is modulated? |
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| K48‐linked ubiquitination of cGAS | Impairs IFNs production | E3 ubiquitin ligase accountable this practice is unidentified |
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| Glutamylation | Glutamylation of cGAS by TTLL4 and TTLL6 | TTLL6 dampens DNA binding activity, and TTLL4 blocks the synthase activity of cGAS | How do these enzymes function to regulate cGAS activity? |
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| SUMOylation | TRIM38 prevents cGAS for K48‐linked ubiquitination and degradation | Ensures regulation and triggering of the cGAS‐STING immune pathway | Optimal stimulation and shutting of cGAS‐STING immune pathway remains unclear; function of Senp2 at the advanced phase of viral contagion remains unclear |
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| SENP7 protease deSUMOylates cGAS | Activates SUMOylated cGAS | Distinct mechanistic function of SUMOylation in cGAS‐dsDNA cytosolic sensing response remains unclear |
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| Cross talk | Autophagy | Beclin‐1 autophagy protein interacts with cGAS | Impairs cGAS, decreases cGAMP synthesis and impairs IFNs | Probably IFI16, DDX41, or additional cytosolic DNA sensors likewise aim Beclin‐1 and prompt autophagy? |
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| TRIM14 inhibits autophagic degradation of cGAS | Inhibits degradation of cGAS and enhance the production of IFN | Distinct regulation of cGAS by ubiquitination remains to be elucidated |
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| Inflammasome | Caspase‐1 interacts and cleaves cGAS | Impedes cGAMP production and IFN induction | Molecular basis of caspases in balancing between IFN and inflammasomes remain unclear; caspase inhibitors should be closely investigated in trials and for antiviral drugs |
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Figure 4Innate immune regulation of cGAS‐STING‐mediated immune pathways by the host or viral elements. Regulation of cGAS‐mediated immune pathways include i) neutralization of viral nucleic acids, capsid, and proteins by host elements, ii) inhibition of DNA binding to cGAS by viral proteins, iii) inhibition of cGAS activity, cGAS downstream signaling, and its expression by viral‐encoded proteins, phosphorylation, methylation and autophagy, iv) inhibition, blockade, and activity prevention of cGAMP, STING‐TBK1, IRF3/7, NF‐κB, ISGs, IFNs, JAK/STAT signaling pathway, and other cytokines by several viral‐encoded proteins and host elements. Additionally, cGAS is indispensable for cGAS‐STING‐mediated antitumor immunity by superior cross‐presentation of tumor‐related antigens to CD8 T‐cells or CTLs. SOCS, suppressor of cytokine signaling; IFNAR, IFN‐α/β receptor; CTL, cytotoxic T‐cell; CD, cluster of differentiation; Ub, ubiquitin.
Cytosolic nucleic acid sensors and immunotherapy
| Sensor | Recognized pathogens | Activation/Recognizing legend | Biological response | Immunotherapy | Reference |
|---|---|---|---|---|---|
| NLRP3 | Influenza virus, SeV, adenovirus, | Bacterial RNAs, DAMPs | Interleukin‐1β (IL‐1β) | Targeting tumor microenvironment via inflammasome/IL‐1 blockade |
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| PKR | Bacillus subtilis, encephalomyocarditis virus (EMCV), Theiler's murine encephalomyelitis virus (TMEV), Semliki forest virus (SFV) | dsRNA, short 5′‐ppp RNAs, bacterial RNA, i.e., Bacillus subtilis trp 5'‐UTR | IFN | Suppressing nc886/PKR's oncogenic role, PKR phosphorylation of factor‐2 alpha (eIF2α) inhibits HCV, targeting of PKR and PACT for pharmacological PKR inhibition |
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| IFIT | Newcastle disease virus, SeV, dengue virus 2 infections (DENV2) | 5'ppp viral ssRNA, adenylate uridylate (AU)‐rich viral RNAs | IRF, IFN | IFIT binding with eIF3 suppresses translation initiation complex and inhibits protein translation, regulation of IFIT2 by Wnt/β‐catenin immune signaling in human colorectal carcinogenesis |
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| NOD2 | Human respiratory syncytial virus, Borrelia burgdorferi, | Viral ssRNA, muramyl dipeptide (MDP) | IRF, IFN, pro‐inflammatory cytokines | Activation of NOD2 to induce vigorous cell‐based anti‐tumor innate immunity, targeting of NOD2 ligand MDP and SNPs, epicutaneous (EC) immunization of TNP‐Ig and MDP NOD2 |
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| ZBP1/DAI |
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poly(dA‐dT), VACV DNA, DNA, CT DNA, mtDNA | IRF3, IFN | Regulation of ALD‐DNA‐stimulated macrophage M2b polarization in SLE disease |
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| LRRFIP1 |
| GC‐rich Z‐form dsDNA, AT‐rich B‐form dsDNA | IRF3, IFN, IFN‐β | High baseline LRRFIP1 induction in glioblastoma multiforme (GBM) is linked with improved activity to teniposide type II topoisomerase inhibitory agent, LRRFIP1 shRNA lentivirus as prevention strategy for Deep vein thrombosis (DVT), LRRFIP1 induces IFN‐β and inhibits HCV infection in hepatocytes, LRRFIP1 silencing backs the epithelial‐mesenchymal transition (EMT) through inhibitory response of Wnt/β‐catenin |
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| DDX41 | HSV1, pseudorabies virus, swine virus | B‐form DNA poly(dA:dT), Z‐form DNA poly(dG:dC), c‐di‐GMP, dsDNA | IRF3, IFN, IFN‐β | Somatic DDX41 p.R525H mutation in acute myeloid leukemia (AML), cyclic di‐GMP/YSK05 liposome' for cancer immunotherapy, DDX41 as an effective adjuvant for the G‐based DNA vaccine |
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| Ku70/80 | HSV1, herpes simplex virus‐2 (HSV‐2), modified vaccinia Ankara (MVA), intradermal infection | DNA DSBs | IRF1, IRF7, IFN‐λ1 | Ku70 predicts results of RT in prostate cancer, EAF2 as a critical factor mediating androgen protection of DNA damage via Ku70/Ku80 in prostate cancer, Ku70 silences chemo‐sensitizes gemcitabine in pancreatic cancer cells, target therapy for radiosensitization of Glioblastoma multiforme (GBM) with hyper‐activated UBE2S, ku70/80 as prognostic tool to envisage the reaction to chemoradiation in locally progressive rectal cancer (LARC) |
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| MRE11 | HSV, | dsDNA, MRN complex | IRF3, IFN | MRE11 as a prognostic biomarker for PARP‐inhibitor therapeutic response and MRN complex therapy, MRE11 in DNA repair and autophagy in cancer therapy, inhibition of adeno‐associated virus by MRN complex |
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| DNA‐PK | VACV, HSV1 | DSB | IRF3, IFN | Regulation of DNA‐PK in asthma therapy, anti‐DPK3‐scFv as a novel biological radiosensitizer for cancer therapy, DNA‐PKCS inhibitory agent KU60648 as a promising radiosensitizing mediator for osteosarcoma |
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| AIM2 | Coxsackievirus B3 (CVB3), | dsDNA | IL‐1β, IL‐18 | AIM2 co‐immunization helps CD8(+) T‐cell production and amends CVB3 stimulated chronic myocarditis, AIM2‐adjuvanted viral capsid protein 1 (VP1) vaccine for CVB3 therapy, AIM‐2 as antigen‐specific active immunotherapy for glioma patients |
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| IFI16 | HIV‐1, | ssDNA, dsDNA | IFN | IFI16 is an exclusive host sensor protein associated in the EBV infection cycle evincing it a prospective therapy to fight EBV‐related infections, IFI16 expression in p16 therapy, Anti‐IFI16 IgG antibodies in infliximab (IFX) therapy, IFI16 in hepatocellular carcinoma (HCC) therapy |
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| Pol III | Adenovirus, HSV1, EBV, | B‐form dsDNA, | IFN | Targeting Pol III for IFN‐β therapy |
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| Sox2 |
| dsDNA | TNF, IL‐6, IL‐1β, proinflammatory cytokines | Targeting Sox2 for T‐cells cancer immunotherapy |
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| cGAS | HSV1, VACV | ssDNA, short dsDNA, G‐YSD, oxidized DNA, B‐form DNA | IFN | Measurement of cGAS activity in cancer immunity and targeting cGAS‐STING pathway in cancer immunotherapy, inhibition of dsDNA stimulation of cGAS by antimalarial drugs (AMDs) |
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PACT, protein activator of the IFN‐induced protein kinase; LGR5, leucine‐rich repeat‐containing G‐protein coupled receptor 5; eIF3, eukaryotic initiation factor 3; SNPs, single‐nucleotide polymorphisms; TNP, 2,4,6‐trinitrophenyl; ALD‐DNA, activated lymphocyte derivative DNA; shRNA, short hairpin RNA or small hairpin RNA; SLFN11, Schlafen family member 11; avSG, antiviral stress granules; c‐di‐GMP/YSK05‐Lip, c‐di‐GMP encapsulated within YSK05‐liposomes; EAF2, ELL associated factor 2; UBE2S, ubiquitin‐conjugating enzyme E2 S; PARP, poly ADP ribose polymerase; scFv, single‐chain variable fragment; KU60648, water‐soluble analog of NU7441; CD8, cluster of differentiation 8; p16, tumor suppressor gene.
Figure 5cGAS is essential in cellular senescence and SASP regulation. A) Senescence is triggered by various cellular stresses and cell damage, succeeding the accrual of cytosolic DNA. Consequently, cGAS recognizes DNA and triggers the cGAS–STING pathway to produce SASP factors and induce autocrine and paracrine senescence. Anti‐inflammatory cytokines mediate the clearance of tumor cells by immune cells, whereas pro‐inflammatory cytokines enhance tumorigenesis. B) The processes that lead to cellular senescence, age‐associated diseases, and fundamental aging mechanisms. Interacting with these processes may provide possible therapeutic measures to improve human health.