| Literature DB >> 32194659 |
Shou-Feng Zhao1, Xue-Jing Yin2, Wen-Ju Zhao3, Le-Cui Liu4, Zhi-Peng Wang5.
Abstract
Biglycan (BGN), a key member of the small leucine-rich proteoglycan family, is an important component of the extracellular matrix. Clinical studies have demonstrated that upregulation of BGN is associated with poor prognosis in patients with various types of solid cancer. The present study analyzed the mRNA expression levels of BGN in various types of solid cancer when compared with that in normal tissues via the Oncomine database. The UALCAN, OncoLnc and Kaplan-Meier Plotter databases were additionally used to evaluate the prognostic values of BGN in patients with solid cancer and co-expression gene analysis was conducted using the protein-protein interaction networks of BGN. The present study observed that the mRNA expression levels of BGN were increased in bladder, brain and central nervous system, breast, colorectal, esophageal, gastric, head and neck, lung, ovarian and 28 subtypes of cancer compared with normal tissues. The increased expression of BGN was identified to be associated with a poor outcome in ovarian and gastric cancer. Based on the co-expression network, BGN was identified as the key gene in a 43-gene network. The present findings of increased expression of BGN in solid tumors and its positive association with poor outcome on patient survival indicate that BGN may serve as a prognostic marker and as a target for novel therapeutics for multiple types of cancer. Copyright: © Zhao et al.Entities:
Keywords: biglycan; biomarker; cancer
Year: 2020 PMID: 32194659 PMCID: PMC7039163 DOI: 10.3892/ol.2020.11266
Source DB: PubMed Journal: Oncol Lett ISSN: 1792-1074 Impact factor: 2.967
Figure 1.mRNA expression levels of BGN in different types of cancer from the Oncomine database. The schematic reveals the numbers of datasets with statistically significant mRNA overexpression (red) or underexpression (blue) of the target gene. Darker red indicates higher BGN expression, Darker blue indicates lower BGN expression. The color is determined by the best gene rank percentile for the analyses within the cell. The number in each cell represents the number of analyses that met the thresholds of: Gene, BGN; analysis type, cancer vs. normal; and data type, mRNA. The thresholds were set at 2-fold change, P<1×10−4 and the top 10% gene rank. For cervical cancer, melanoma, myeloma and prostate cancer, there was no analysis (white cell) that met the aforementioned thresholds. The gene rank was analyzed using the percentile of target gene in the top of all genes measured in each analysis. BGN, biglycan; CNS, central nervous system.
Significant changes of biglycan mRNA expression between different subtypes of bladder, brain and CNS, breast, colorectal, esophageal, gastric, head and neck, lung, ovarian, other types of cancer and 28 subtypes cancer.
| Type of cancer | Cancer Subtype (n) | Normal, n | Fold change | t-test | P-value | Rank, % | (Refs.) |
|---|---|---|---|---|---|---|---|
| Bladder | Infiltrating Bladder Urothelial Carcinoma (IBLCA) ( | 3 | 2.391 | 6.799 | 7.02×10−7 | 1 | ( |
| Brain and CNS | Glioblastoma (GBM) ( | 4 | 3.055 | 13.066 | 6.77×10−14 | 1 | ( |
| Glioblastoma (GBM) ( | 3 | 13.32 | 7.773 | 4.92×10−5 | 4 | ||
| Glioblastoma (GBM) ( | 23 | 2.163 | 7.599 | 7.14×10−11 | 7 | ||
| Breast | Ductal Breast Carcinoma in Situ Stroma (DCIS) ( | 14 | 13.191 | 7.155 | 2.28×10−11 | ( | |
| Invasive Ductal Breast Carcinoma Stroma (IDC) ( | 14 | 7.232 | 5.357 | 1.27×10−6 | 1 | ||
| Invasive Lobular Breast Carcinoma (ILC) ( | 61 | 3.312 | 13.142 | 1.58×10−22 | 1 | ( | |
| Invasive Breast Carcinoma (BRCA) ( | 61 | 3.131 | 14.001 | 1.22×10−27 | 1 | ||
| Male Breast Carcinoma (MBC) ( | 61 | 4.661 | 10.406 | 3.76×10−5 | 4 | ||
| Mixed Lobular and Ductal Breast Carcinoma (IDC-L) ( | 61 | 2.780 | 5.576 | 8.56×10−5 | 4 | ||
| Invasive Ductal Breast Carcinoma (IDC) (389) | 61 | 2.714 | 14.829 | 5.11×10−25 | 5 | ||
| Tubular Breast Carcinoma (TBC) (67) | 144 | 3.014 | 18.174 | 4.05×10−41 | 1 | ( | |
| Invasive Lobular Breast Carcinoma (ILBC) (148) | 144 | 3.087 | 19.715 | 8.92×10−56 | 1 | ||
| Invasive Ductal and Invasive Lobular Breast | 144 | 2.885 | 14.973 | 4.81×10−33 | 1 | ||
| Carcinoma (IDC and ILC) (90) | |||||||
| Breast Carcinoma (BC) (14) | 144 | 2.884 | 5.505 | 3.00×10−5 | 4 | ||
| Invasive Ductal Breast Carcinoma (IDC) (1556) | 144 | 2.988 | 26.199 | 1.50×10−62 | 5 | ||
| Medullary Breast Carcinoma (MBC) (32) | 144 | 2.256 | 6.302 | 1.13×10−7 | 9 | ||
| Invasive Ductal Breast Carcinoma Stroma (IDBCs) (7) | 15 | 3.546 | 6.337 | 2.70×10−6 | 1 | (39) | |
| Ductal Breast Carcinoma (DBC) (36) | 3 | 3.337 | 9.550 | 7.02×10−6 | 2 | (40) | |
| Lobular Breast Carcinoma (LBC) (21) | 3 | 3.337 | 10.925 | 1.22×10−7 | 1 | (41) | |
| Invasive Ductal Breast Carcinoma (IDBC) (38) | 3 | 6.756 | 12.230 | 1.80×10−6 | 5 | ||
| Colorectal | Colon Adenocarcinoma (COAD) (41) | 5 | 3.200 | 13.125 | 1.74×10−15 | 1 | (44) |
| Colon Mucinous Adenocarcinoma (CMA) (13) | 5 | 2.942 | 9.781 | 6.65 ×10−8 | 1 | ||
| Rectosigmoid Adenocarcinoma (RSA) (10) | 5 | 3.799 | 7.377 | 4.85×10−6 | 2 | ||
| Cecum Adenocarcinoma (CeAC) (17) | 5 | 3.039 | 6.529 | 1.17×10−6 | 4 | ||
| Colorectal Carcinoma (CC) (36) | 24 | 4.795 | 8.671 | 3.32×10−12 | 1 | ( | |
| Colorectal Carcinoma (CC) (18) | 12 | 2.563 | 5.442 | 5.94×10−6 | 4 | ( | |
| Colon Carcinoma (cc) (5) | 10 | 7.740 | 15.965 | 3.60×10−10 | 2 | ( | |
| Colon Adenocarcinoma (COAD) (5) | 10 | 4.099 | 14.219 | 6.23×10−9 | 2 | ||
| Colon Mucinous Adenocarcinoma (CMA) (101) | 22 | 2.324 | 11.956 | 3.48×10−19 | 3 | ( | |
| Rectal Adenocarcinoma (READ) (22) | 22 | 3.772 | 10.097 | 4.62×10−11 | 3 | ||
| Rectal Adenocarcinoma (READ) (60) | 22 | 2.065 | 8.557 | 3.90×10−13 | 7 | ||
| Rectal Adenocarcinoma (READ) (65) | 65 | 2.068 | 11.751 | 2.16×10−19 | 6 | ( | |
| Colorectal Carcinoma (CC) (70) | 12 | 3.508 | 9.208 | 4.02×10−9 | 7 | ( | |
| Esophageal | Esophageal Squamous Cell Carcinoma (ESCC) (53) | 53 | 2.795 | 10.666 | 3.73×10−17 | 2 | ( |
| Esophageal Squamous Cell Carcinoma (ESCC) (17) | 17 | 2.964 | 5.524 | 3.47×10−6 | 5 | ( | |
| Esophageal Adenocarcinoma (EA) (14) | 10 | 10.158 | 8.460 | 8.51×10−5 | 5 | ( | |
| Gastric | Gastric Intestinal Type Adenocarcinoma(ITGA) (62) | 29 | 4.852 | 18.317 | 4.31×10−32 | 1 | ( |
| Diffuse Gastric Adenocarcinoma (DGAC) (13) | 29 | 6.483 | 23.103 | 1.13×10−17 | 1 | ||
| Gastric mixed Adenocarcinoma (GMA) (8) | 29 | 9.700 | 11.684 | 1.63×10−6 | 1 | ||
| Diffuse Gastric Adenocarcinoma (DGAC) (31) | 19 | 3.287 | 8.446 | 2.38×10−11 | 1 | ( | |
| Gastric Intestinal Type Adenocarcinoma (ITGA) (20) | 19 | 3.038 | 6.251 | 4.01×10−7 | 1 | ||
| Gastric Cancer (GC) (15) | 12 | 5.721 | 5.853 | 2.49×10−6 | 1 | ( | |
| Diffuse Gastric Adenocarcinoma (DGAC) (6) | 31 | 6.207 | 5.794 | 9.36×10−5 | 2 | ( | |
| Gastric Mixed Adenocarcinoma (GMA) (4) | 31 | 9.737 | 8.460 | 1.49×10−5 | 3 | ||
| Gastric Intestinal Type Adenocarcinoma (ITGA) (26) | 31 | 4.413 | 7.512 | 2.59×10−9 | 5 | ||
| Gastric Cancer (GC) (80) | 80 | 3.226 | 5.032 | 6.55×10−7 | 2 | ( | |
| Head and neck | Salivary Gland Adenoid Cystic Carcinoma (SGACC) (16) | 6 | 4.703 | 11.107 | 5.90×10−10 | 1 | ( |
| Lung | Squamous Cell Carcinoma (SCC) (34) | 28 | 2.177 | 5.194 | 1.45×10−6 | 10 | ( |
| Ovarian | Ovarian Serous Surface Papillary Carcinoma (SSPC) (28) | 4 | 36.947 | 7.443 | 2.62×10−8 | 2 | ( |
| Ovarian Carcinoma (OC) (185) | 10 | 3.105 | 10.018 | 9.77×10−9 | 7 | ( | |
| Ovarian Serous Cystadenocarcinoma (OSC) (586) | 8 | 2.706 | 8.141 | 2.09×10−5 | 10 | ( | |
| Other cancer | Skin Basal Cell Carcinoma (SBCC) (15) | 4 | 5.312 | 11.144 | 1.81 ×10−9 | 1 | ( |
Cancer samples were compared with normal tissues. CNS, central nervous system; TCGA, The Cancer Genome Atlas; IBLCA Infiltrating Bladder Urothelial Carcinoma.
Overall survival of patients with different types of cancer with overexpressed BGN gene.
| Cancer types | RNA-seq P-value (database) | gene chip P-value (database) |
|---|---|---|
| Breast cancer | 0.2556[ | 0.7210[ |
| Esophageal adenocarcinoma | 0.0965[ | N/A |
| Lung cancer | 0.3010[ | 0.0002[ |
| Gastric cancer | 0.0068[ | 1.3×10−10a |
| Ovarian cancer | 0.0093[ | 0.0004[ |
| Bladder cancer | 0.0025[ | N/A |
Calculated using
Kaplan-Meier Plotter databases with RNA-seq data and gene chip data. BGN, biglycan; N/A, not applicable.
Overall survival of patients with different subtypes of cancer with overexpressed BGN gene.
| Cancer subtype | RNA-seq P-value (database) | gene chip P-value (database) |
|---|---|---|
| Lung squamous cell carcinoma | 0.0111[ | N/A |
| Ovarian serous cystadenocarcinoma | 0.0290[ | N/A |
| Breast invasive carcinoma | 0.9400[ | N/A |
| Colon adenocarcinoma | 0.0963[ | N/A |
| Rectum adenocarcinoma | 0.1776[ | N/A |
| Esophageal Squamous | 0.2707[ | N/A |
| Cell Carcinoma |
Calculated using
Kaplan-Meier Plotter databases
OncoLnc
UALCAN with RNA-seq data. BGN, biglycan; N/A, not applicable.
Figure 2.OS curves of patients with different types of cancer divided by BGN expression. High expression levels of the BGN gene exhibited a significant association with lower OS time in patients with (A) gastric cancer (gene chip data), (B) gastric cancer (RNA-seq data), (C) ovarian cancer (gene chip data), (D) ovarian cancer (RNA-seq data). The plots were generated using the KM plotter database. The red lines indicate patients with BGN gene expression above the median value, and the black lines indicate patients with BGN gene expression below the median value. OS, overall survival; BGN, biglycan; HR, hazard ratio.
Figure 3.PPI network for BGN and its potential interacting proteins. Genes that were co-expressed in cancer together with BGN were extracted from the GEPIA database, and then a PPI network was established using the STRING database and visualized using the Cytoscape software. TGFβ3 was highlighted in yellow because it may play an important role to regulate the expression of BGN. PPI, protein-protein interactions; BGN, biglycan; TGFβ3, transforming growth factor β3.