Literature DB >> 32184968

Structure-Activity Relationship Study of Covalent Pan-phosphatidylinositol 5-Phosphate 4-Kinase Inhibitors.

Theresa D Manz1,2,3, Sindhu C Sivakumaren1,2, Adam Yasgar4, Matthew D Hall4, Mindy I Davis4, Hyuk-Soo Seo1,2, Joseph D Card5,6,7, Scott B Ficarro5,6,7, Hyeseok Shim8, Jarrod A Marto5,6,7, Sirano Dhe-Paganon1,2, Atsuo T Sasaki9, Matthew B Boxer4, Anton Simeonov4, Lewis C Cantley8, Min Shen4, Tinghu Zhang1,2, Fleur M Ferguson1,2, Nathanael S Gray1,2.   

Abstract

Phosphatidylinositol 5-phosphate 4-kinases (PI5P4Ks) are important molecular players in a variety of diseases, such as cancer. Currently available PI5P4K inhibitors are reversible small molecules, which may lack selectivity and sufficient cellular on-target activity. In this study, we present a new class of covalent pan-PI5P4K inhibitors with potent biochemical and cellular activity. Our designs are based on THZ-P1-2, a covalent PI5P4K inhibitor previously developed in our lab. Here, we report further structure-guided optimization and structure-activity relationship (SAR) study of this scaffold, resulting in compound 30, which retained biochemical and cellular potency, while demonstrating a significantly improved selectivity profile. Furthermore, we confirm that the inhibitors show efficient binding affinity in the context of HEK 293T cells using isothermal CETSA methods. Taken together, compound 30 represents a highly selective pan-PI5P4K covalent lead molecule.
Copyright © 2019 American Chemical Society.

Entities:  

Year:  2019        PMID: 32184968      PMCID: PMC7074221          DOI: 10.1021/acsmedchemlett.9b00402

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  16 in total

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Authors:  Qingsong Liu; Yogesh Sabnis; Zheng Zhao; Tinghu Zhang; Sara J Buhrlage; Lyn H Jones; Nathanael S Gray
Journal:  Chem Biol       Date:  2013-02-21

2.  PIP4K2A regulates intracellular cholesterol transport through modulating PI(4,5)P2 homeostasis.

Authors:  Ao Hu; Xue-Tong Zhao; Heng Tu; Ting Xiao; Ting Fu; Yan Wang; Yong Liu; Xiong-Jie Shi; Jie Luo; Bao-Liang Song
Journal:  J Lipid Res       Date:  2018-01-20       Impact factor: 5.922

Review 3.  PtdIns5P and Pin1 in oxidative stress signaling.

Authors:  Willem-Jan Keune; David R Jones; Nullin Divecha
Journal:  Adv Biol Regul       Date:  2013-03-13

4.  Overexpression of the amplified Pip4k2beta gene from 17q11-12 in breast cancer cells confers proliferation advantage.

Authors:  Shiuh-Wen Luoh; Natarajan Venkatesan; Reshimi Tripathi
Journal:  Oncogene       Date:  2004-02-19       Impact factor: 9.867

5.  In B cells, phosphatidylinositol 5-phosphate 4-kinase-α synthesizes PI(4,5)P2 to impact mTORC2 and Akt signaling.

Authors:  Simon J Bulley; Alaa Droubi; Jonathan H Clarke; Karen E Anderson; Len R Stephens; Phillip T Hawkins; Robin F Irvine
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-06       Impact factor: 11.205

6.  A targeted knockdown screen of genes coding for phosphoinositide modulators identifies PIP4K2A as required for acute myeloid leukemia cell proliferation and survival.

Authors:  Nullin Divecha; Tim C P Somervaille; Julian G Jude; Gary J Spencer; Xu Huang; Tim D D Somerville; David R Jones
Journal:  Oncogene       Date:  2014-03-31       Impact factor: 9.867

7.  Inhibition of PIP4Kγ ameliorates the pathological effects of mutant huntingtin protein.

Authors:  Lois S Weisman; Juan Botas; Ismael Al-Ramahi; Sai Srinivas Panapakkam Giridharan; Yu-Chi Chen; Samarjit Patnaik; Nathaniel Safren; Junya Hasegawa; Maria de Haro; Amanda K Wagner Gee; Steven A Titus; Hyunkyung Jeong; Jonathan Clarke; Dimitri Krainc; Wei Zheng; Robin F Irvine; Sami Barmada; Marc Ferrer; Noel Southall; Juan Jose Marugan
Journal:  Elife       Date:  2017-12-26       Impact factor: 8.140

8.  Dual blockade of the lipid kinase PIP4Ks and mitotic pathways leads to cancer-selective lethality.

Authors:  Mayumi Kitagawa; Pei-Ju Liao; Kyung Hee Lee; Jasmine Wong; See Cheng Shang; Noriaki Minami; Oltea Sampetrean; Hideyuki Saya; Dai Lingyun; Nayana Prabhu; Go Ka Diam; Radoslaw Sobota; Andreas Larsson; Pär Nordlund; Frank McCormick; Sujoy Ghosh; David M Epstein; Brian W Dymock; Sang Hyun Lee
Journal:  Nat Commun       Date:  2017-12-19       Impact factor: 14.919

9.  A homogeneous, high-throughput assay for phosphatidylinositol 5-phosphate 4-kinase with a novel, rapid substrate preparation.

Authors:  Mindy I Davis; Atsuo T Sasaki; Min Shen; Brooke M Emerling; Natasha Thorne; Sam Michael; Rajan Pragani; Matthew Boxer; Kazutaka Sumita; Koh Takeuchi; Douglas S Auld; Zhuyin Li; Lewis C Cantley; Anton Simeonov
Journal:  PLoS One       Date:  2013-01-10       Impact factor: 3.240

10.  The function of phosphatidylinositol 5-phosphate 4-kinase γ (PI5P4Kγ) explored using a specific inhibitor that targets the PI5P-binding site.

Authors:  Jonathan H Clarke; Maria-Luisa Giudici; John E Burke; Roger L Williams; David J Maloney; Juan Marugan; Robin F Irvine
Journal:  Biochem J       Date:  2015-03-01       Impact factor: 3.857

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  8 in total

1.  Targeting the PI5P4K Lipid Kinase Family in Cancer Using Covalent Inhibitors.

Authors:  Sindhu Carmen Sivakumaren; Hyeseok Shim; Tinghu Zhang; Fleur M Ferguson; Mark R Lundquist; Christopher M Browne; Hyuk-Soo Seo; Marcia N Paddock; Theresa D Manz; Baishan Jiang; Ming-Feng Hao; Pranav Krishnan; Diana G Wang; T Jonathan Yang; Nicholas P Kwiatkowski; Scott B Ficarro; James M Cunningham; Jarrod A Marto; Sirano Dhe-Paganon; Lewis C Cantley; Nathanael S Gray
Journal:  Cell Chem Biol       Date:  2020-03-03       Impact factor: 8.116

Review 2.  Mechanistic roles of mutant p53 governing lipid metabolism.

Authors:  Ryan M Loughran; Brooke M Emerling
Journal:  Adv Biol Regul       Date:  2021-11-23

Review 3.  When PIP2 Meets p53: Nuclear Phosphoinositide Signaling in the DNA Damage Response.

Authors:  Yu-Hsiu Wang; Michael P Sheetz
Journal:  Front Cell Dev Biol       Date:  2022-05-13

4.  Discovery and Structure-Activity Relationship Study of (Z)-5-Methylenethiazolidin-4-one Derivatives as Potent and Selective Pan-phosphatidylinositol 5-Phosphate 4-Kinase Inhibitors.

Authors:  Theresa D Manz; Sindhu Carmen Sivakumaren; Fleur M Ferguson; Tinghu Zhang; Adam Yasgar; Hyuk-Soo Seo; Scott B Ficarro; Joseph D Card; Hyeseok Shim; Chandrasekhar V Miduturu; Anton Simeonov; Min Shen; Jarrod A Marto; Sirano Dhe-Paganon; Matthew D Hall; Lewis C Cantley; Nathanael S Gray
Journal:  J Med Chem       Date:  2020-04-27       Impact factor: 7.446

5.  Pharmacological inhibition of PI5P4Kα/β disrupts cell energy metabolism and selectively kills p53-null tumor cells.

Authors:  Song Chen; Caroline Chandra Tjin; Xiang Gao; Yi Xue; Haoyan Jiao; Ruilin Zhang; Mengnan Wu; Zunyu He; Jonathan Ellman; Ya Ha
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-25       Impact factor: 11.205

6.  Crucial Players for Inter-Organelle Communication: PI5P4Ks and Their Lipid Product PI-4,5-P2 Come to the Surface.

Authors:  Archna Ravi; Lavinia Palamiuc; Brooke M Emerling
Journal:  Front Cell Dev Biol       Date:  2022-01-07

7.  Development of Selective Phosphatidylinositol 5-Phosphate 4-Kinase γ Inhibitors with a Non-ATP-competitive, Allosteric Binding Mode.

Authors:  Helen K Boffey; Timothy P C Rooney; Henriette M G Willems; Simon Edwards; Christopher Green; Tina Howard; Derek Ogg; Tamara Romero; Duncan E Scott; David Winpenny; James Duce; John Skidmore; Jonathan H Clarke; Stephen P Andrews
Journal:  J Med Chem       Date:  2022-02-11       Impact factor: 8.039

8.  Mono- and Diamination of 4,6-Dichloropyrimidine, 2,6-Dichloropyrazine and 1,3-Dichloroisoquinoline with Adamantane-Containing Amines.

Authors:  Alisa D Kharlamova; Anton S Abel; Alexei D Averin; Olga A Maloshitskaya; Vitaly A Roznyatovskiy; Evgenii N Savelyev; Boris S Orlinson; Ivan A Novakov; Irina P Beletskaya
Journal:  Molecules       Date:  2021-03-29       Impact factor: 4.411

  8 in total

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