Literature DB >> 32184955

Identification of RIPK3 Type II Inhibitors Using High-Throughput Mechanistic Studies in Hit Triage.

Amy C Hart1, Lynn Abell1, Junqing Guo1, Michael E Mertzman1, Ramesh Padmanabha1, John E Macor1, Charu Chaudhry1, Hao Lu1, Kevin O'Malley1, Patrick J Shaw1, Carolyn Weigelt1, Matthew Pokross1, Kevin Kish1, Kyoung S Kim1, Lyndon Cornelius1, Andrew E Douglas1, Deepa Calambur1, Ping Zhang1, Brian Carpenter1, William J Pitts1.   

Abstract

Necroptosis has been implicated in a variety of disease states, and RIPK3 is one of the kinases identified to play a critical role in this signaling pathway. In an effort to identify RIPK3 kinase inhibitors with a novel profile, mechanistic studies were incorporated at the hit triage stage. Utilization of these assays enabled identification of a Type II DFG-out inhibitor for RIPK3, which was confirmed by protein crystallography. Structure-based drug design on the inhibitors targeting this previously unreported conformation enabled an enhancement in selectivity against key off-target kinases.
Copyright © 2019 American Chemical Society.

Entities:  

Year:  2019        PMID: 32184955      PMCID: PMC7073880          DOI: 10.1021/acsmedchemlett.9b00065

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  27 in total

1.  Discovery of pyrrolopyridine-pyridone based inhibitors of Met kinase: synthesis, X-ray crystallographic analysis, and biological activities.

Authors:  Kyoung Soon Kim; Liping Zhang; Robert Schmidt; Zhen-Wei Cai; Donna Wei; David K Williams; Louis J Lombardo; George L Trainor; Dianlin Xie; Yaquan Zhang; Yongmi An; John S Sack; John S Tokarski; Celia Darienzo; Amrita Kamath; Punit Marathe; Yueping Zhang; Jonathan Lippy; Robert Jeyaseelan; Barri Wautlet; Benjamin Henley; Johnni Gullo-Brown; Veeraswamy Manne; John T Hunt; Joseph Fargnoli; Robert M Borzilleri
Journal:  J Med Chem       Date:  2008-08-09       Impact factor: 7.446

2.  Structural insights into RIP3-mediated necroptotic signaling.

Authors:  Tian Xie; Wei Peng; Chuangye Yan; Jianping Wu; Xinqi Gong; Yigong Shi
Journal:  Cell Rep       Date:  2013-10-03       Impact factor: 9.423

Review 3.  αC helix displacement as a general approach for allosteric modulation of protein kinases.

Authors:  Lorenzo Palmieri; Giulio Rastelli
Journal:  Drug Discov Today       Date:  2012-11-27       Impact factor: 7.851

4.  Targeting the unactivated conformations of protein kinases for small molecule drug discovery.

Authors:  Gordon R Alton; Elizabeth A Lunney
Journal:  Expert Opin Drug Discov       Date:  2008-06       Impact factor: 6.098

Review 5.  Classification of small molecule protein kinase inhibitors based upon the structures of their drug-enzyme complexes.

Authors:  Robert Roskoski
Journal:  Pharmacol Res       Date:  2015-10-31       Impact factor: 7.658

6.  RIP1 Kinase Drives Macrophage-Mediated Adaptive Immune Tolerance in Pancreatic Cancer.

Authors:  Wei Wang; Jill M Marinis; Allison M Beal; Shivraj Savadkar; Yue Wu; Mohammed Khan; Pardeep S Taunk; Nan Wu; Wenyu Su; Jingjing Wu; Aarif Ahsan; Emma Kurz; Ting Chen; Inedouye Yaboh; Fei Li; Johana Gutierrez; Brian Diskin; Mautin Hundeyin; Michael Reilly; John D Lich; Philip A Harris; Mukesh K Mahajan; James H Thorpe; Pamela Nassau; Julie E Mosley; Joshua Leinwand; Juan A Kochen Rossi; Ankita Mishra; Berk Aykut; Michael Glacken; Atsuo Ochi; Narendra Verma; Jacqueline I Kim; Varshini Vasudevaraja; Dennis Adeegbe; Christina Almonte; Ece Bagdatlioglu; Deirdre J Cohen; Kwok-Kin Wong; John Bertin; George Miller
Journal:  Cancer Cell       Date:  2018-11-12       Impact factor: 31.743

7.  The design, synthesis, and evaluation of 8 hybrid DFG-out allosteric kinase inhibitors: a structural analysis of the binding interactions of Gleevec, Nexavar, and BIRB-796.

Authors:  Justin Dietrich; Christopher Hulme; Laurence H Hurley
Journal:  Bioorg Med Chem       Date:  2010-06-04       Impact factor: 3.641

8.  DFGmodel: predicting protein kinase structures in inactive states for structure-based discovery of type-II inhibitors.

Authors:  Peter Man-Un Ung; Avner Schlessinger
Journal:  ACS Chem Biol       Date:  2014-12-09       Impact factor: 5.100

Review 9.  Exploration of type II binding mode: A privileged approach for kinase inhibitor focused drug discovery?

Authors:  Zheng Zhao; Hong Wu; Li Wang; Yi Liu; Stefan Knapp; Qingsong Liu; Nathanael S Gray
Journal:  ACS Chem Biol       Date:  2014-04-29       Impact factor: 5.100

10.  6E11, a highly selective inhibitor of Receptor-Interacting Protein Kinase 1, protects cells against cold hypoxia-reoxygenation injury.

Authors:  C Delehouzé; S Leverrier-Penna; F Le Cann; A Comte; M Jacquard-Fevai; O Delalande; N Desban; B Baratte; I Gallais; F Faurez; M C Bonnet; M Hauteville; P G Goekjian; R Thuillier; F Favreau; P Vandenabeele; T Hauet; M T Dimanche-Boitrel; S Bach
Journal:  Sci Rep       Date:  2017-10-10       Impact factor: 4.379

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  5 in total

Review 1.  The regulation of necroptosis by post-translational modifications.

Authors:  Yanxiang Meng; Jarrod J Sandow; Peter E Czabotar; James M Murphy
Journal:  Cell Death Differ       Date:  2021-01-18       Impact factor: 15.828

Review 2.  RIPK3: A New Player in Renal Fibrosis.

Authors:  Ying Shi; Xinming Chen; Chunling Huang; Carol Pollock
Journal:  Front Cell Dev Biol       Date:  2020-06-16

3.  Human RIPK3 maintains MLKL in an inactive conformation prior to cell death by necroptosis.

Authors:  Yanxiang Meng; Katherine A Davies; Cheree Fitzgibbon; Samuel N Young; Sarah E Garnish; Christopher R Horne; Cindy Luo; Jean-Marc Garnier; Lung-Yu Liang; Angus D Cowan; Andre L Samson; Guillaume Lessene; Jarrod J Sandow; Peter E Czabotar; James M Murphy
Journal:  Nat Commun       Date:  2021-11-22       Impact factor: 14.919

4.  Loss of Ripk3 attenuated neutrophil accumulation in a lipopolysaccharide-induced zebrafish inflammatory model.

Authors:  Wanying Wen; Jiakui Chen; Yuxin Zhou; Gaofei Li; Yiyue Zhang
Journal:  Cell Death Discov       Date:  2022-02-26

Review 5.  RIPK protein kinase family: Atypical lives of typical kinases.

Authors:  Gregory D Cuny; Alexei Degterev
Journal:  Semin Cell Dev Biol       Date:  2020-07-27       Impact factor: 7.727

  5 in total

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