| Literature DB >> 32176628 |
Elina Kaikkonen1, Aliisa Takala1, Juha-Pekka Pursiheimo1, Gudrun Wahlström1, Johanna Schleutker1,2.
Abstract
BACKGROUND: Elevated Anoctamin 7 (ANO7) expression is associated with poor survival in prostate cancer patients.Entities:
Keywords: ANO7; AP2B1; BioID; COPG2; HSPA1A; interactome; prostate cancer; proteomics
Mesh:
Substances:
Year: 2020 PMID: 32176628 PMCID: PMC7306890 DOI: 10.3233/CBM-190993
Source DB: PubMed Journal: Cancer Biomark ISSN: 1574-0153 Impact factor: 4.388
Figure 1.Proteins selected for validation. A schematic diagram showing a brief description of how proteins were selected for the final analysis. Eighty-three proteins were unique to the ANOL construct and not found in Bir-HA controls. After filtering against the CRAPome database and a known BioID background, 64 proteins remained. Among the 15 proteins detected in at least 2 replicates, those with vesicle-related functions were selected for validation with co-localization analysis (5 proteins).
Figure 2.Biotinylation of proteins in ANO7L-Bir-HA-transfected LNCaP cells. A. Immunohistochemical staining of HA-tagged ANO7L-Bir (red) and biotinylated proteins with Alexa Fluor 488-tagged streptavidin (green) and nuclear staining with DAPI (blue). B. The insoluble cell lysate fraction is on the left side, and streptavidin bead pull-down samples are on the right side. The control lane contains untransfected LNCaP cells treated with biotin. Expression of the fusion proteins was detected with anti-HA, biotinylated proteins were detected with streptavidin-HRP, and total protein were detected with Ponceau S staining. The staining was visualized with Nikon Eclipse Ni-U upright fluorescence microscope (Nikon Instruments, Inc. Shinagawa, Tokyo, Japan).
Results of the GO cellular component enrichment analysis (fold enrichment 2 and FDR 1E-04)
| GO cellular component | Fold | FDR | |
| enrichment | |||
| Protein-containing complex | 2. | 43 | 2.18E-08 |
| Membrane-enclosed lumen | 2. | 37 | 2.56E-07 |
| Extracellular exosome | 3. | 77 | 2.57E-07 |
| Chromosome | 5. | 5 | 2.67E-07 |
| Extracellular organelle | 3. | 72 | 2.67E-07 |
| Intracellular organelle lumen | 2. | 37 | 2.77E-07 |
| Extracellular vesicle | 3. | 73 | 2.82E-07 |
| Organelle lumen | 2. | 37 | 3.02E-07 |
| Site of DNA damage | 28. | 78 | 1.15E-06 |
| Intracellular non-membrane-bounded | 2. | 49 | 2.60E-06 |
| organelle | |||
| Non-membrane-bounded organelle | 2. | 48 | 2.60E-06 |
| Vesicle | 2. | 54 | 9.26E-06 |
| Nuclear chromosome, telomeric region | 19. | 19 | 1.14E-05 |
| Arp2/3 protein complex | 1.72E-05 | ||
| Chromosomal part | 4. | 91 | 2.74E-05 |
| Nucleoplasm | 2. | 53 | 4.86E-05 |
| Nucleoplasm part | 4. | 35 | 4.88E-05 |
| Chromosome, telomeric region | 14. | 59 | 5.39E-05 |
| Nuclear lumen | 2. | 37 | 5.51E-05 |
FDR false discovery rate.
Figure 3.Co-localization of ANO7 and the identified interaction partners. Double staining of ANO7L-BirA-HA, BirA-HA or His-tagged ANO7 shown in green and the interaction partners (AP2B1/COPG2/HSPA1A/SND1) shown in red. Co-localization was visualized with the fluorescence intensity profiles below the microscope figures. The intensity profile allows visualisation of the intensity of red and green staining along the line added into the immunofluorescence figure. In the microscope figures, yellow spots indicate co-localization, which are also indicated by overlapping peaks in the signal intensity curves. A. AP2B1. B. COPG2. C. HSPA1A. D. SND1.