Literature DB >> 32171918

Machine learning models for drug-target interactions: current knowledge and future directions.

Sofia D'Souza1, K V Prema1, Seetharaman Balaji2.   

Abstract

Predicting the binding affinity between compounds and proteins with reasonable accuracy is crucial in drug discovery. Computational prediction of binding affinity between compounds and targets greatly enhances the probability of finding lead compounds by reducing the number of wet-lab experiments. Machine-learning and deep-learning techniques using ligand-based and target-based approaches have been used to predict binding affinities, thereby saving time and cost in drug discovery efforts. In this review, we discuss about machine-learning and deep-learning models used in virtual screening to improve drug-target interaction (DTI) prediction. We also highlight current knowledge and future directions to guide further development in this field.
Copyright © 2020 Elsevier Ltd. All rights reserved.

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Year:  2020        PMID: 32171918     DOI: 10.1016/j.drudis.2020.03.003

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  21 in total

1.  A Novel Method to Predict Drug-Target Interactions Based on Large-Scale Graph Representation Learning.

Authors:  Bo-Wei Zhao; Zhu-Hong You; Lun Hu; Zhen-Hao Guo; Lei Wang; Zhan-Heng Chen; Leon Wong
Journal:  Cancers (Basel)       Date:  2021-04-27       Impact factor: 6.639

2.  DTI-SNNFRA: Drug-target interaction prediction by shared nearest neighbors and fuzzy-rough approximation.

Authors:  Sk Mazharul Islam; Sk Md Mosaddek Hossain; Sumanta Ray
Journal:  PLoS One       Date:  2021-02-19       Impact factor: 3.240

Review 3.  Chagas Disease: Perspectives on the Past and Present and Challenges in Drug Discovery.

Authors:  Felipe Raposo Passos Mansoldo; Fabrizio Carta; Andrea Angeli; Veronica da Silva Cardoso; Claudiu T Supuran; Alane Beatriz Vermelho
Journal:  Molecules       Date:  2020-11-23       Impact factor: 4.411

4.  A computational framework of host-based drug repositioning for broad-spectrum antivirals against RNA viruses.

Authors:  Zexu Li; Yingjia Yao; Xiaolong Cheng; Qing Chen; Wenchang Zhao; Shixin Ma; Zihan Li; Hu Zhou; Wei Li; Teng Fei
Journal:  iScience       Date:  2021-02-05

5.  An Ensemble Learning-Based Method for Inferring Drug-Target Interactions Combining Protein Sequences and Drug Fingerprints.

Authors:  Zheng-Yang Zhao; Wen-Zhun Huang; Xin-Ke Zhan; Jie Pan; Yu-An Huang; Shan-Wen Zhang; Chang-Qing Yu
Journal:  Biomed Res Int       Date:  2021-04-24       Impact factor: 3.411

Review 6.  Deep Learning in Virtual Screening: Recent Applications and Developments.

Authors:  Talia B Kimber; Yonghui Chen; Andrea Volkamer
Journal:  Int J Mol Sci       Date:  2021-04-23       Impact factor: 5.923

7.  Repurposing of Drugs for SARS-CoV-2 Using Inverse Docking Fingerprints.

Authors:  Marko Jukič; Katarina Kores; Dušanka Janežič; Urban Bren
Journal:  Front Chem       Date:  2021-12-28       Impact factor: 5.221

Review 8.  Machine Learning Methods in Drug Discovery.

Authors:  Lauv Patel; Tripti Shukla; Xiuzhen Huang; David W Ussery; Shanzhi Wang
Journal:  Molecules       Date:  2020-11-12       Impact factor: 4.411

Review 9.  State-of-the-Art Review of Artificial Neural Networks to Predict, Characterize and Optimize Pharmaceutical Formulation.

Authors:  Shan Wang; Jinwei Di; Dan Wang; Xudong Dai; Yabing Hua; Xiang Gao; Aiping Zheng; Jing Gao
Journal:  Pharmaceutics       Date:  2022-01-13       Impact factor: 6.321

Review 10.  Advances in the computational landscape for repurposed drugs against COVID-19.

Authors:  Illya Aronskyy; Yosef Masoudi-Sobhanzadeh; Antonio Cappuccio; Elena Zaslavsky
Journal:  Drug Discov Today       Date:  2021-07-30       Impact factor: 7.851

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