Literature DB >> 32171772

An efficient procedure to assist in the re-parametrization of structurally unidentifiable models.

D Joubert1, J D Stigter2, J Molenaar2.   

Abstract

An efficient method that assists in the re-parametrization of structurally unidentifiable models is introduced. It significantly reduces computational demand by combining numerical and symbolic identifiability calculations. This hybrid approach facilitates the re-parametrization of large unidentifiable ordinary differential equation models, including models where state transformations are required. A model is first assessed numerically, to discover potential structurally unidentifiable parameters. We then use symbolic calculations to confirm the numerical results, after which we describe the algebraic relationships between the unidentifiable parameters. Finally, the unidentifiable parameters are substituted with new parameters and simplification ensures that all the unidentifiable parameters are eliminated from the original model structure. The novelty of this method is its utilisation of numerical results, which notably reduces the number of symbolic calculations required. We illustrate our procedure and the detailed re-parametrization process in 5 examples: (1) an immunological model, (2) a microbial growth model, (3) a lung cancer model, (4) a JAK/STAT model, and (5) a small linear model with a non-scalable re-parametrization.
Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Correlated parameter sets; Re-parametrization; State transformation; Structural identifiability; Systems biology

Mesh:

Year:  2020        PMID: 32171772     DOI: 10.1016/j.mbs.2020.108328

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  1 in total

1.  GAMES: A Dynamic Model Development Workflow for Rigorous Characterization of Synthetic Genetic Systems.

Authors:  Kate E Dray; Joseph J Muldoon; Niall M Mangan; Neda Bagheri; Joshua N Leonard
Journal:  ACS Synth Biol       Date:  2022-01-13       Impact factor: 5.249

  1 in total

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