Literature DB >> 32167316

Efficient Global Structure Optimization with a Machine-Learned Surrogate Model.

Malthe K Bisbo1, Bjørk Hammer1.   

Abstract

We propose a scheme for global optimization with first-principles energy expressions of atomistic structure. While unfolding its search, the method actively learns a surrogate model of the potential energy landscape on which it performs a number of local relaxations (exploitation) and further structural searches (exploration). Assuming Gaussian processes, deploying two separate kernel widths to better capture rough features of the energy landscape while retaining a good resolution of local minima, an acquisition function is used to decide on which of the resulting structures is the more promising and should be treated at the first-principles level. The method is demonstrated to outperform by 2 orders of magnitude a well established first-principles based evolutionary algorithm in finding surface reconstructions. Finally, global optimization with first-principles energy expressions is utilized to identify initial stages of the edge oxidation and oxygen intercalation of graphene sheets on the Ir(111) surface.

Entities:  

Year:  2020        PMID: 32167316     DOI: 10.1103/PhysRevLett.124.086102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  9 in total

1.  Gaussian Process Regression for Materials and Molecules.

Authors:  Volker L Deringer; Albert P Bartók; Noam Bernstein; David M Wilkins; Michele Ceriotti; Gábor Csányi
Journal:  Chem Rev       Date:  2021-08-16       Impact factor: 60.622

2.  Active discovery of organic semiconductors.

Authors:  Christian Kunkel; Johannes T Margraf; Ke Chen; Harald Oberhofer; Karsten Reuter
Journal:  Nat Commun       Date:  2021-04-23       Impact factor: 14.919

3.  Efficient Amino Acid Conformer Search with Bayesian Optimization.

Authors:  Lincan Fang; Esko Makkonen; Milica Todorović; Patrick Rinke; Xi Chen
Journal:  J Chem Theory Comput       Date:  2021-02-12       Impact factor: 6.006

Review 4.  Dynamics of Heterogeneous Catalytic Processes at Operando Conditions.

Authors:  Xiangcheng Shi; Xiaoyun Lin; Ran Luo; Shican Wu; Lulu Li; Zhi-Jian Zhao; Jinlong Gong
Journal:  JACS Au       Date:  2021-11-04

5.  Machine learning potentials for complex aqueous systems made simple.

Authors:  Christoph Schran; Fabian L Thiemann; Patrick Rowe; Erich A Müller; Ondrej Marsalek; Angelos Michaelides
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-21       Impact factor: 11.205

6.  Automated exploitation of the big configuration space of large adsorbates on transition metals reveals chemistry feasibility.

Authors:  Geun Ho Gu; Miriam Lee; Yousung Jung; Dionisios G Vlachos
Journal:  Nat Commun       Date:  2022-04-26       Impact factor: 17.694

7.  Systematic Comparison of Genetic Algorithm and Basin Hopping Approaches to the Global Optimization of Si(111) Surface Reconstructions.

Authors:  Maximilian N Bauer; Matt I J Probert; Chiara Panosetti
Journal:  J Phys Chem A       Date:  2022-05-06       Impact factor: 2.944

8.  Structure of an Ultrathin Oxide on Pt3 Sn(111) Solved by Machine Learning Enhanced Global Optimization.

Authors:  Lindsay R Merte; Malthe Kjaer Bisbo; Igor Sokolović; Martin Setvín; Benjamin Hagman; Mikhail Shipilin; Michael Schmid; Ulrike Diebold; Edvin Lundgren; Bjørk Hammer
Journal:  Angew Chem Int Ed Engl       Date:  2022-04-29       Impact factor: 16.823

9.  Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems.

Authors:  John A Keith; Valentin Vassilev-Galindo; Bingqing Cheng; Stefan Chmiela; Michael Gastegger; Klaus-Robert Müller; Alexandre Tkatchenko
Journal:  Chem Rev       Date:  2021-07-07       Impact factor: 60.622

  9 in total

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