Literature DB >> 32165244

A new implication of quasispecies dynamics: Broad virus diversification in absence of external perturbations.

Esteban Domingo1, María Eugenia Soria2, Isabel Gallego3, Ana Isabel de Ávila4, Carlos García-Crespo4, Brenda Martínez-González2, Jordi Gómez5, Carlos Briones6, Josep Gregori7, Josep Quer8, Celia Perales9.   

Abstract

RNA genetic elements include many important animal and plant pathogens. They share high mutability, a trait that has multiple implications for the interactions with their host organisms. Here we review evidence of a new adaptive feature of RNA viruses that we term "broadly diversifying selection". It constitutes a new type of positive selection without participation of any external selective agent, and which is built upon a progressive increase of the number of different genomes that dominate the population. The evidence was provided by analyses of mutant spectrum composition of two important viral pathogens, foot-and-mouth disease virus (FMDV) and hepatitis C virus (HCV) after prolonged replication in their respective cell culture environment. Despite being fueled by mutations that arise randomly and in absence of an external guiding selective force, this type of selection prepares the viral population for a response to selective forces still to occur. Since current evidence suggests that broadly diversifying selection is favored by elevated mutation rates and population sizes, it may constitute a more general behavior, relevant also to the adaptive dynamics of microbial populations and cancer cells.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Adaptive strategies; Foot-and-mouth disease virus; Hepatitis C virus; Mutational waves; RNA viruses; Selective forces

Year:  2020        PMID: 32165244     DOI: 10.1016/j.meegid.2020.104278

Source DB:  PubMed          Journal:  Infect Genet Evol        ISSN: 1567-1348            Impact factor:   3.342


  7 in total

1.  SARS-CoV-2 Mutant Spectra at Different Depth Levels Reveal an Overwhelming Abundance of Low Frequency Mutations.

Authors:  Brenda Martínez-González; María Eugenia Soria; Lucía Vázquez-Sirvent; Cristina Ferrer-Orta; Rebeca Lobo-Vega; Pablo Mínguez; Lorena de la Fuente; Carlos Llorens; Beatriz Soriano; Ricardo Ramos-Ruíz; Marta Cortón; Rosario López-Rodríguez; Carlos García-Crespo; Pilar Somovilla; Antoni Durán-Pastor; Isabel Gallego; Ana Isabel de Ávila; Soledad Delgado; Federico Morán; Cecilio López-Galíndez; Jordi Gómez; Luis Enjuanes; Llanos Salar-Vidal; Mario Esteban-Muñoz; Jaime Esteban; Ricardo Fernández-Roblas; Ignacio Gadea; Carmen Ayuso; Javier Ruíz-Hornillos; Nuria Verdaguer; Esteban Domingo; Celia Perales
Journal:  Pathogens       Date:  2022-06-08

2.  Amino Acid Substitutions Associated with Treatment Failure for Hepatitis C Virus Infection.

Authors:  María Eugenia Soria; Carlos García-Crespo; Brenda Martínez-González; Lucía Vázquez-Sirvent; Rebeca Lobo-Vega; Ana Isabel de Ávila; Isabel Gallego; Qian Chen; Damir García-Cehic; Meritxell Llorens-Revull; Carlos Briones; Jordi Gómez; Cristina Ferrer-Orta; Nuria Verdaguer; Josep Gregori; Francisco Rodríguez-Frías; María Buti; Juan Ignacio Esteban; Esteban Domingo; Josep Quer; Celia Perales
Journal:  J Clin Microbiol       Date:  2020-11-18       Impact factor: 5.948

3.  LUCS: a high-resolution nucleic acid sequencing tool for accurate long-read analysis of individual DNA molecules.

Authors:  Sofia Annis; Zoë Fleischmann; Robert Logan; Zachary Mullin-Bernstein; Melissa Franco; Josefin Saürich; Jonathan L Tilly; Dori C Woods; Konstantin Khrapko
Journal:  Aging (Albany NY)       Date:  2020-04-28       Impact factor: 5.682

Review 4.  Population Disequilibrium as Promoter of Adaptive Explorations in Hepatitis C Virus.

Authors:  Carlos García-Crespo; Isabel Gallego; María Eugenia Soria; Ana Isabel de Ávila; Brenda Martínez-González; Lucía Vázquez-Sirvent; Rebeca Lobo-Vega; Elena Moreno; Jordi Gómez; Carlos Briones; Josep Gregori; Josep Quer; Esteban Domingo; Celia Perales
Journal:  Viruses       Date:  2021-04-03       Impact factor: 5.048

5.  A Two-Level, Intramutant Spectrum Haplotype Profile of Hepatitis C Virus Revealed by Self-Organized Maps.

Authors:  Soledad Delgado; Celia Perales; Carlos García-Crespo; María Eugenia Soria; Isabel Gallego; Ana Isabel de Ávila; Brenda Martínez-González; Lucía Vázquez-Sirvent; Cecilio López-Galíndez; Federico Morán; Esteban Domingo
Journal:  Microbiol Spectr       Date:  2021-11-10

6.  Standing Genetic Diversity and Transmission Bottleneck Size Drive Adaptation in Bacteriophage Qβ.

Authors:  Pilar Somovilla; Alicia Rodríguez-Moreno; María Arribas; Susanna Manrubia; Ester Lázaro
Journal:  Int J Mol Sci       Date:  2022-08-09       Impact factor: 6.208

7.  Drug Sensitivity of Vaccine-Derived Rubella Viruses and Quasispecies Evolution in Granulomatous Lesions of Two Ataxia-Telangiectasia Patients Treated with Nitazoxanide.

Authors:  Raeesa Faisthalab; Suganthi Suppiah; Morna Dorsey; Kathleen E Sullivan; Joseph Icenogle; Ludmila Perelygina
Journal:  Pathogens       Date:  2022-03-11
  7 in total

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